Index of data/mondo/2021-10-01

• ../
• kg-covid-19/20201001/raw/chembl_document_records.json
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/decision_tree/SkipGram/3_775ad329b78dcd9fbf46e362c925a4978b2f104747cb22a534bd68c681feed51.pkl.gz
• kg-covid-19/20201012/raw/chembl_assay_records.json
• kg-covid-19/20210128/raw/41421_2020_153_MOESM1_ESM.pdf
• kg-covid-19/20201101/raw/gene_info.gz
• kg-covid-19/20200925/transformed/intact/edges.tsv
• kg-covid-19/20210101/transformed/pharmgkb/edges.tsv
• kg-covid-19/20201012/raw/gene_info.gz
• embeddings/20201012/downloaded_data/embeddings-20201012/SkipGram/18765f87a8c26dcf0773611b6bc7d4711e9b9fba7ab831f6734754d40e01a708_2.csv.gz
• embeddings/20201012/downloaded_data/embeddings-20201012/SkipGram/7e062a81cd2691373ffa303ca64bef0636d63cd93a90a4b9c3242d342df34477_2.csv.gz
• kg-covid-19/20200927/transformed/zhou_host_proteins/nodes.tsv
• kg-covid-19/20200929/transformed/ontologies/go-plus_nodes.tsv
• kg-covid-19/20210101/transformed/ontologies/chebi_edges.tsv
• embeddings/20201012/downloaded_data/pos_neg_data_dir/negative_nodes.tsv
• kg-covid-19/20201202/transformed/ChEMBL/index.html
• kg-covid-19/20201101/transformed/ontologies/mondo_edges.tsv
• kg-covid-19/20201101/raw/cv19_scc_1_2.zip
• embeddings/20201012/downloaded_data/kg-covid-19-20201001/merged-kg_edges.tsv
• embeddings/20201012/downloaded_data/ranked-drug-lists/cosine_sim/chembl_antiviral_sars_cov_2_cosine_sim.tsv
• kg-covid-19/20200929/raw/chebi.json.gz
• kg-covid-19/20200925/raw/__MACOSX/pmc_json/._PMC4243715.xml.json
• kg-covid-19/20200925/transformed/SciBite-CORD-19/edges.tsv
• kg-covid-19/20210101/raw/tcrd.zip
• kg-covid-19/20210201/raw/.gitkeep
• kg-covid-19/20200925/transformed/ontologies/mondo_nodes.tsv
• embeddings/20201012/SkipGram_80_20_kg_covid_19_20201012_training_test_epoch_500_delta_0.0001weightedL2_finalized_model.h5
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/mlp/SkipGram/1_08e327e7614ff1a2f5c6734544e4afcfb6260d42820815c9b7118db6836a5b69.pkl.gz
• kg-covid-19/20201101/transformed/pharmgkb/index.html
• kg-covid-19/20200925/transformed/ontologies/hp_edges.tsv
• kg-covid-19/20201101/transformed/STRING/edges.tsv
• kg-covid-19/20201001/transformed/drug_central/index.html
• kg-covid-19/20200927/raw/pmc_json.zip
• kg-covid-19/20200927/transformed/ontologies/go-plus_nodes.tsv
• kg-covid-19/20210128/transformed/intact/edges.tsv
• kg-covid-19/20200925/raw/cv19_scc_1_2.zip
• kg-covid-19/20210128/stats/index.html
• embeddings/20201012/downloaded_data/embeddings-20201012/SkipGram/6ff751108781d30d73abd1fd02c8bfd7355b705888bf4c60d431cc154c97f302_4.csv.gz
• kg-covid-19/20201001/transformed/SciBite-CORD-19/edges.tsv
• kg-covid-19/20201202/raw/__MACOSX/._cv19_scc.tsv
• kg-covid-19/20210101/raw/uniprot_sars-cov-2.gpi
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/random_forest/SkipGram/2_a6fd0f65d13c1eb3f6c906ab6be318397c29e978ba82f4a80f71bf10da4c8800.pkl.gz
• kg-covid-19/20200925/raw/hp.json
• kg-covid-19/20201101/transformed/ChEMBL/nodes.tsv
• kg-covid-19/20200927/transformed/zhou_host_proteins/edges.tsv
• kg-covid-19/20201012/transformed/ontologies/chebi_nodes.tsv
• kg-covid-19/20200925/transformed/GOCAMs/GOCAMs_nodes.tsv
• kg-covid-19/20200927/raw/relationships.zip
• embeddings/20201012/downloaded_data/ranked-drug-lists/mlp_link_pred/mlp_link_pred_ranked_drug_compound_list.csv.bak
• kg-covid-19/20200927/transformed/drug_central/edges.tsv
• kg-covid-19/20200927/transformed/SciBite-CORD-19/edges.tsv
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/random_forest/SkipGram/1_3d74c0a45fd5a053f5555bc446404889bdb0903cef33c453e39c7af9e917f147.pkl.gz
• kg-covid-19/20201012/transformed/ttd/index.html
• embeddings/20201001/SkipGram_80_20_kg_covid_19_20201001_training_test_epoch_500_delta_0.0001_weightedL1_finalized_model.h5
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/decision_tree/SkipGram/5_e600b18853a542f39ef21423ee2131cbc27fc34c230e63f682e47e3aa0afade1.pkl.gz
• kg-covid-19/20200927/raw/.gitkeep
• kg-covid-19/20201012/raw/gene2ensembl.gz
• kg-covid-19/20200929/transformed/index.html
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/random_forest/SkipGram/3_b3563422c68a4c1683283fa216215ca81f12858e36aebc36b1aec75fdd7f5751.pkl.gz
• kg-covid-19/20201202/raw/chembl_activity_records.json
• kg-covid-19/20210101/raw/mondo.json
• kg-covid-19/20210128/transformed/ttd/edges.tsv
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/random_forest/SkipGram/0_bc57ad05299fed12d59e16503f82325d9cd3f3d020efe83204c61357e8d880f9.pkl.gz
• kg-covid-19/20200925/index.html
• kg-covid-19/20200929/transformed/ontologies/hp_nodes.tsv
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/mlp/SkipGram/3_afa86893298f65cafd6ec0bb870d5d18bf6be1248b2d7774a5b1dbe6d87cd426.pkl.gz
• kg-covid-19/20201101/transformed/ontologies/hp_nodes.tsv
• kg-covid-19/20200925/transformed/zhou_host_proteins/edges.tsv
• kg-covid-19/20200927/transformed/ontologies/hp_nodes.tsv
• kg-covid-19/20210201/index.html
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/decision_tree/SkipGram/6_e349be3ede5306af35c9fd3d9834943741fa73836878a7d7a0d0613162bbf92d.pkl.gz
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/mlp/SkipGram/2_f8878ab39ca742b9d0c24328a73b559591bfd2d2c9160f8a787ae6acb9bf5ab9.pkl.gz
• kg-covid-19/20200929/raw/chembl_document_records.json
• kg-covid-19/20201001/transformed/STRING/index.html
• kg-covid-19/20201012/index.html
• kg-covid-19/20200925/transformed/zhou_host_proteins/index.html
• kg-covid-19/20200925/kg-covid-19.jnl.gz
• kg-covid-19/20210128/raw/lifted-go-cams-20200619.xml
• kg-covid-19/20210128/transformed/pharmgkb/nodes.tsv
• kg-covid-19/20201012/raw/pmc_json.zip
• kg-covid-19/20201101/raw/uniprot_sars-cov-2.gpa
• kg-covid-19/20200929/raw/chembl_molecule_records.json
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/mlp/SkipGram/2_9030b1a7f139ccc062bd3c4f674afe09f9d3053435534da53a6a44fd8d345dc1.pkl.gz
• kg-covid-19/20200929/transformed/drug_central/edges.tsv
• kg-covid-19/20200929/transformed/intact/edges.tsv
• kg-covid-19/20201012/kg-covid-19.jnl.gz
• kg-covid-19/20210101/kg-covid-19.jnl.gz
• kg-covid-19/20200927/transformed/ontologies/chebi_nodes.tsv
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/mlp/SkipGram/6_b33b7905c5dc8e9f448d574a37e3562a8e389583813fd65e22d8d9f16330b482.pkl.gz
• kg-covid-19/20201202/raw/41421_2020_153_MOESM1_ESM.pdf
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/logistic_regression/SkipGram/0_81b961f7b4c7d5ee6b41df5374076f709da3506e7923e6d53922ffee77f2610c.pkl.gz
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/random_forest/SkipGram/6_0c62faf683d0ecbb5c2a207fe2f00ac80e5b9060a979ca899f22e4299ce2d102.pkl.gz
• embeddings/20201012/ranked_list_borda_output.tsv
• embeddings/20201012/SkipGram_80_20_kg_covid_19_20201012_training_test_epoch_500_delta_0.0001hadamard_finalized_model.h5
• kg-covid-19/20210101/transformed/sars_cov_2_gene_annot/edges.tsv
• embeddings/20201012/downloaded_data/ranked-drug-lists/mlp_link_pred/mlp_link_pred.h5
• kg-covid-19/20200925/raw/9606.protein.links.full.v11.0.txt.gz
• kg-covid-19/20201001/transformed/SciBite-CORD-19/entity_cooccurrence_nodes.tsv
• kg-covid-19/20201012/raw/tcrd.zip
• kg-covid-19/20201101/raw/go-plus.json
• kg-covid-19/20210101/transformed/pharmgkb/nodes.tsv
• embeddings/20201012/SkipGram_80_20_kg_covid_19_20201012_training_test_epoch_500_delta_0.0001_weightedL1_finalized_model.h5
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/random_forest/SkipGram/2_50333695d796eb306a71b99b0aabcefacb0b0bc51f46826f22ae90f97946cb7b.pkl.gz
• kg-covid-19/20201202/kg-covid-19.nt.gz
• json_transform.log
• kg-covid-19/20200929/index.html
• kg-covid-19/20200925/transformed/sars_cov_2_gene_annot/edges.tsv
• kg-covid-19/20210101/transformed/ontologies/go-plus_nodes.tsv
• kg-covid-19/20201202/raw/chembl_assay_records.json
• embeddings/20201012/downloaded_data/classifiers-20201012/SkipGram_80_20_kg_covid_19_20201012_training_test_epoch_500_delta_0.0001hadamard_finalized_model.h5
• embeddings/20201001/SkipGram_80_20_kg_covid_19_20201001_training_test_epoch_500_delta_0.0001_weights.h5
• kg-covid-19/20210101/transformed/drug_central/index.html
• mondo_kgx.json
• kg-covid-19/20201101/kg-covid-19.nt.gz
• kg-covid-19/20201101/Jenkinsfile
• kg-covid-19/20210101/transformed/STRING/nodes.tsv
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/decision_tree/SkipGram/3_0f8b5773a879c5022eccb283387f1e36ba0f78818f96cd8e409085f7ce876b1e.pkl.gz
• kg-covid-19/20201012/transformed/sars_cov_2_gene_annot/index.html
• kg-covid-19/20210128/raw/pdf_json.zip
• kg-covid-19/20210128/raw/uniprot_sars-cov-2.gpi
• kg-covid-19/20210128/transformed/drug_central/index.html
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/logistic_regression/SkipGram/2_027f4532a956c24e36e6f96c1cac62d37805d262631c3d5cd3b0efe6b790cb4f.pkl.gz
• kg-covid-19/20201202/transformed/ontologies/go-plus_edges.tsv
• kg-covid-19/20201001/raw/__MACOSX/index.html
• kg-covid-19/20201001/raw/mondo.json
• kg-covid-19/20201001/transformed/sars_cov_2_gene_annot/nodes.tsv
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/random_forest/SkipGram/0_39d6e9b15e191ca78eb42bb9834f9458203f27313d67a2f4dc615d734b40d98f.pkl.gz
• kg-covid-19/20200925/raw/intact_coronavirus.zip
• kg-covid-19/20200929/raw/hp.json
• kg-covid-19/20201012/raw/41421_2020_153_MOESM1_ESM.pdf
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/random_forest/SkipGram/4_9141876febab8c6f3915a4293d3cd5922462619032325313ae33082ef5deeb69.pkl.gz
• kg-covid-19/20201012/transformed/sars_cov_2_gene_annot/edges.tsv
• kg-covid-19/20200929/transformed/ttd/index.html
• kg-covid-19/20201012/transformed/GOCAMs/GOCAMs_edges.tsv
• embeddings/20201012/downloaded_data/embeddings-20201012/SkipGram/2239a0e56b5cca2f112a9868f536da431e689e2c1a1b9f7f9f5859f131ce52b2_-100.csv.gz
• embeddings/20201012/downloaded_data/embeddings-20201012/SkipGram/2111ba69da0caacf6c2c9309dca5bae2c740454cb090faa2973d4e92f036496c_5.csv.gz
• kg-covid-19/20200929/raw/drug.target.interaction.tsv.gz
• kg-covid-19/20201001/raw/gene2ensembl.gz
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/logistic_regression/SkipGram/5_146a3c9b0aa09354b1d37a9655aa09170e675772a14969b858dc9616df02375b.pkl.gz
• frozen_incoming_data/sri/sri-reference-kg-0.3.0_nodes.tsv
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/decision_tree/SkipGram/4_e092b0d8e79f4b00cd5115b1ec1b957f8b953d25f49a9f74a1770dbbfdeb15c1.pkl.gz
• kg-covid-19/20210101/stats/index.html
• kg-covid-19/20201012/transformed/intact/nodes.tsv
• kg-covid-19/20200925/transformed/GOCAMs/index.html
• embeddings/20201012/downloaded_data/pos_neg_data_dir/positive_nodes.tsv
• kg-covid-19/20201012/raw/go-plus.json
• kg-covid-19/20210128/raw/go-plus.json
• kg-covid-19/20201001/raw/chebi.json.gz
• kg-covid-19/20201012/transformed/SciBite-CORD-19/edges.tsv
• kg-covid-19/20201101/transformed/ontologies/mondo_nodes.tsv
• kg-covid-19/20200927/transformed/GOCAMs/index.html
• kg-covid-19/20201012/transformed/drug_central/edges.tsv
• embeddings/20201012/downloaded_data/ranked-drug-lists/ranked_list_borda_output.tsv
• kg-covid-19/20200927/transformed/STRING/edges.tsv
• kg-covid-19/20210201/raw/chembl_assay_records.json
• kg-covid-19/20201202/transformed/GOCAMs/GOCAMs_nodes.tsv
• kg-covid-19/20201012/transformed/SciBite-CORD-19/entity_cooccurrence_nodes.tsv
• kg-covid-19/20210101/raw/chebi.json.gz
• kg-covid-19/20201101/raw/index.html
• kg-covid-19/20200925/transformed/pharmgkb/index.html
• kg-covid-19/20201012/stats/index.html
• kg-covid-19/20200927/raw/drug.target.interaction.tsv.gz
• kg-covid-19/20210128/README
• kg-covid-19/20200925/transformed/ontologies/hp_nodes.tsv
• kg-covid-19/20201202/transformed/pharmgkb/index.html
• kg-covid-19/20200929/transformed/ttd/nodes.tsv
• kg-covid-19/20210101/transformed/ontologies/hp_edges.tsv
• kg-covid-19/20200929/transformed/sars_cov_2_gene_annot/index.html
• kg-covid-19/20200929/transformed/GOCAMs/GOCAMs_edges.tsv
• embeddings/20201012/downloaded_data/embeddings-20201012/SkipGram/reduced_graph.csv.gz
• kg-covid-19/20200925/transformed/ttd/nodes.tsv
• kg-covid-19/20200929/raw/9606.protein.links.full.v11.0.txt.gz
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/decision_tree/SkipGram/2_d1402914f3a4b5ddcd9b81496debbc487888408dcd55cba8693b1b2e6161c838.pkl.gz
• embeddings/20201012/downloaded_data/kg-covid-19-20201012/edges_with_holdout_column.tsv
• kg-covid-19/20201001/raw/pdf_json.zip
• kg-covid-19/20200929/raw/chembl_activity_records.json
• kg-covid-19/20210128/transformed/ontologies/mondo_nodes.tsv
• kg-covid-19/20210128/transformed/sars_cov_2_gene_annot/index.html
• kg-covid-19/20201001/transformed/intact/index.html
• kg-covid-19/20201202/transformed/ttd/nodes.tsv
• kg-covid-19/20210128/transformed/ontologies/go-plus_nodes.tsv
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/mlp/SkipGram/4_d7e4ad5d030593ef01326993adca034689644baada5bd349a6c6adf2d4736e87.pkl.gz
• kg-covid-19/20210201/README
• kg-covid-19/20201012/raw/cv19_scc.tsv
• embeddings/20201012/downloaded_data/classifiers-20201001/SkipGram_80_20_kg_covid_19_20201001_training_test_epoch_500_delta_0.0001weightedL2_finalized_model.h5
• kg-covid-19/20200927/transformed/GOCAMs/GOCAMs_nodes.tsv
• kg-covid-19/20201012/transformed/intact/index.html
• kg-covid-19/20201202/transformed/pharmgkb/edges.tsv
• kg-covid-19/20200929/transformed/zhou_host_proteins/index.html
• kg-covid-19/20201101/raw/.gitkeep
• kg-covid-19/20210128/raw/chembl_molecule_records.json
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/random_forest/SkipGram/5_5797086331ce74ae4fe2769f08811e54ab8cb6d403d0085383566f28029354b0.pkl.gz
• kg-covid-19/20210101/README
• kg-covid-19/20201202/raw/hp.json
• embeddings/20201012/downloaded_data/classifiers-20201001/SkipGram_80_20_kg_covid_19_20201001_training_test_epoch_500_delta_0.0001weightedL1_finalized_model.h5
• kg-covid-19/20201012/kg-covid-19.tar.gz
• kg-covid-19/20210101/raw/chembl_document_records.json
• kg-covid-19/20201012/transformed/ontologies/hp_edges.tsv
• kg-covid-19/20200927/transformed/STRING/nodes.tsv
• kg-covid-19/20200927/transformed/STRING/index.html
• kg-covid-19/20200927/kg-covid-19.tar.gz
• kg-covid-19/20201001/raw/cv19_scc.tsv
• embeddings/20201012/downloaded_data/ranked-drug-lists/mlp_link_pred/drug_coronavirus_infection_mlp_top30.tsv
• kg-covid-19/20200927/transformed/SciBite-CORD-19/entity_cooccurrence_nodes.tsv
• embeddings/20201012/downloaded_data/embeddings-20201012/SkipGram/0be2957e5c5b92176f61b5fbbc05d0bccd57570361a5e3fe670e65684abdb6df_1.csv.gz
• embeddings/20201012/downloaded_data/ranked-drug-lists/mlp_link_pred/mlp_link_pred.history.csv
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• kg-covid-19/20200925/transformed/ontologies/chebi_nodes.tsv
• kg-covid-19/20210128/raw/tcrd.zip
• embeddings/20201012/downloaded_data/sars-cov-2-gpi/uniprot_sars-cov-2.gpi
• kg-covid-19/20201001/transformed/sars_cov_2_gene_annot/edges.tsv
• kg-covid-19/20201012/raw/relationships.zip
• kg-covid-19/20200927/raw/cv19_scc.tsv
• kg-covid-19/20201101/raw/uniprot_sars-cov-2.gpi
• kg-covid-19/20200929/raw/tcrd.zip
• kg-covid-19/20200925/transformed/index.html
• kg-covid-19/20201012/transformed/STRING/index.html
• kg-covid-19/20200929/transformed/STRING/nodes.tsv
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• kg-covid-19/20210101/raw/chembl_activity_records.json
• kg-covid-19/20201202/kg-covid-19.jnl.gz
• kg-covid-19/20201012/transformed/GOCAMs/GOCAMs_nodes.tsv
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/decision_tree/SkipGram/5_477a1c342899355e26750f8d0e07c9112d7bdedf088874c7e40fac984ab10a35.pkl.gz
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/mlp/SkipGram/2_a356805784c972801489fe409dfd9beb79e2db00619b7d35834b49835583229d.pkl.gz
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/logistic_regression/SkipGram/6_86f60f0bd765e2fb1967be40f8e0dbd8db445ac8007927da497e82f65897d601.pkl.gz
• kg-covid-19/20201202/transformed/ontologies/mondo_edges.tsv
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• kg-covid-19/20200929/transformed/STRING/edges.tsv
• kg-covid-19/20200927/raw/uniprot_sars-cov-2.gpa
• kg-covid-19/20210128/transformed/ontologies/go-plus_edges.tsv
• kg-covid-19/20201202/transformed/intact/edges.tsv
• kg-covid-19/20200929/kg-covid-19.tar.gz
• embeddings/20201012/downloaded_data/embeddings-20201012/model_predictions/logistic_regression/SkipGram/3_4e89461a26063ce0aefd918db8904512586bc095eb2fbfb75ebc9a938ea813d7.pkl.gz
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