id category name description provided_by OBO:APOLLO_SV_00000008 biolink:NamedThing software development A planned process that has specified output a software product and that involves the creation of source code. SLSO_relaxed.owl OBI:0000011 biolink:NamedThing planned process A process that realizes a plan which is the concretization of a plan specification.|A processual entity that realizes a plan which is the concretization of a plan specification. SLSO_relaxed.owl OBO:APOLLO_SV_00000796 biolink:NamedThing dataset creating A planned process that has a data set as its specified output. SLSO_relaxed.owl ENVO:01000785 biolink:NamedThing material extraction process A planned process during which a portion of environmental material is removed from a material entity. SLSO_relaxed.owl ENVO:01000993 biolink:NamedThing manufacturing process A planned process during which raw or recycled materials are transformed into products for use or sale using labour and machines, tools, chemical and biological processing, or formulation. SLSO_relaxed.owl ENVO:01000996 biolink:NamedThing human-directed construction process An process during which natural or manufactured materials and products are processed and arranged by humans or their technology into structures. SLSO_relaxed.owl ENVO:01001436 biolink:NamedThing planned environmental usage process A planned process during which humans access and obtain resources, benefits, or services from a natural or anthropised ecosystem. SLSO_relaxed.owl ENVO:02500026 biolink:NamedThing anthropogenic modulatory intervention process A process during which humans apply technology to alter the magnitude, duration, rate, or impact of an environmental process. SLSO_relaxed.owl ENVO:02500041 biolink:NamedThing environmental monitoring An process in which environmental parameters and variables are continually assayed. SLSO_relaxed.owl IAO:0000572 biolink:NamedThing documenting A planned process in which a document is created or added to by including the specified input in it. SLSO_relaxed.owl OBO:OBIB_0000710 biolink:NamedThing survey execution A planned process that realizes the concretization of a survey to generate an output(survey data.) SLSO_relaxed.owl OBI:0000066 biolink:NamedThing investigation a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s). SLSO_relaxed.owl OBI:0000070 biolink:NamedThing assay A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies. SLSO_relaxed.owl OBI:0000094 biolink:NamedThing material processing A planned process which results in physical changes in a specified input material SLSO_relaxed.owl OBI:0000338 biolink:NamedThing drawing a conclusion based on data A planned process in which data gathered in an investigation is evaluated in the context of existing knowledge with the objective to generate more general conclusions or to conclude that the data does not allow one to draw general conclusion SLSO_relaxed.owl OBI:0000471 biolink:NamedThing study design execution a planned process that carries out a study design SLSO_relaxed.owl OBI:0000659 biolink:NamedThing specimen collection process A planned process with the objective of collecting a specimen. SLSO_relaxed.owl OBI:0200000 biolink:NamedThing data transformation A planned process that produces output data from input data. SLSO_relaxed.owl OBI:0200111 biolink:NamedThing data visualization An planned process that creates images, diagrams or animations from the input data. SLSO_relaxed.owl OBO:RBO_00000082 biolink:NamedThing radiobiology study type The theme or modality of an experimental, theoretical, critical or summative study involving radiation, radioactive materials including their impacts on orgnisms and society. SLSO_relaxed.owl OBO:RBO_00002118 biolink:NamedThing radioactive decay A process involving the emission of energy from an atomic nucleus resulting in change in the character of the nucleus SLSO_relaxed.owl OBO:RBO_00015022 biolink:NamedThing track formation SLSO_relaxed.owl OBO:SDDO_1000011 biolink:NamedThing investigation A set of experiments and/or observations. SLSO_relaxed.owl OBO:SDDO_3000081 biolink:NamedThing deployment The realisation of an application, or execution of a plan, idea, model, design, specification, standard, algorithm, or policy. SLSO_relaxed.owl OBO:SDDO_3000088 biolink:NamedThing mission Coordinated tasks and operations undertaken to meet a set of specific objectives, within clearly delineated time and location constraints. SLSO_relaxed.owl OBO:SDDO_3000089 biolink:NamedThing laboratoryProcedure Any procedure that involves testing or manipulating a sample or subject in a laboratory setting SLSO_relaxed.owl OBO:SDDO_3000094 biolink:NamedThing experiment A plan for a coordinated set of actions and observations designed to generate data, with the ultimate goal of discovery or hypothesis testing. SLSO_relaxed.owl OBO:SDDO_3000100 biolink:NamedThing observation Act of carrying out an procedure to estimate or calculate a value of a property of a feature. SLSO_relaxed.owl BFO:0000002 biolink:NamedThing continuant An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. SLSO_relaxed.owl BFO:0000001 biolink:NamedThing entity SLSO_relaxed.owl BFO:0000003 biolink:NamedThing occurrent An entity that has temporal parts and that happens, unfolds or develops through time. SLSO_relaxed.owl BFO:0000004 biolink:NamedThing independent continuant A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.|b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) SLSO_relaxed.owl BFO:0000020 biolink:NamedThing specifically dependent continuant A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.|b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])|b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) SLSO_relaxed.owl BFO:0000031 biolink:NamedThing generically dependent continuant A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.|b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]) SLSO_relaxed.owl BFO:0000006 biolink:NamedThing spatial region SLSO_relaxed.owl BFO:0000141 biolink:NamedThing immaterial entity SLSO_relaxed.owl BFO:0000015 biolink:NamedThing process An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.|p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) SLSO_relaxed.owl PO:0007033 biolink:NamedThing whole plant development stage A plant structure development stage (PO:0009012) that has as primary participant a whole plant (PO:0000003). SLSO_relaxed.owl UBERON:0000000 biolink:NamedThing SLSO_relaxed.owl BFO:0000016 biolink:NamedThing disposition SLSO_relaxed.owl BFO:0000017 biolink:NamedThing realizable entity A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. SLSO_relaxed.owl BFO:0000019 biolink:NamedThing quality SLSO_relaxed.owl PATO:0000001 biolink:NamedThing quality A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities SLSO_relaxed.owl BFO:0000023 biolink:NamedThing role A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts. SLSO_relaxed.owl CHEBI:50906 biolink:NamedThing role A role is particular behaviour which a material entity may exhibit. SLSO_relaxed.owl CHEBI:24432 biolink:NamedThing biological role A role played by the molecular entity or part thereof within a biological context. SLSO_relaxed.owl CHEBI:33232 biolink:NamedThing application Intended use of the molecular entity or part thereof by humans. SLSO_relaxed.owl CHEBI:51086 biolink:NamedThing chemical role A role played by the molecular entity or part thereof within a chemical context. SLSO_relaxed.owl ENVO:01000665 biolink:NamedThing waste role A role that is realized in some process wherein the bearer is discarded or not utilized further. SLSO_relaxed.owl OBI:0000017 biolink:NamedThing regulatory role a role which inheres in material entities and is realized in the processes of making, enforcing or being defined by legislation or orders issued by a governmental body. SLSO_relaxed.owl OBI:0000202 biolink:NamedThing investigation agent role A role borne by an entity and that is realized in a process that is part of an investigation in which an objective is achieved. These processes include, among others: planning, overseeing, funding, reviewing. SLSO_relaxed.owl OBO:OMRSE_00000048 biolink:NamedThing material entity role SLSO_relaxed.owl OBO:RBO_00000111 biolink:NamedThing occupational role A set of behaviours that have some socially agreed upon function and for which there is an accepted code of norms. This may refer to a role within an organisation or within society as a whole. For example a Profession” can be defined as a cluster of occupational roles, or roles in which the incumbents perform certain functions valued in the organisation or society. SLSO_relaxed.owl OBO:SDDO_3000056 biolink:NamedThing author An originator or creator of a work SLSO_relaxed.owl OBO:SDDO_3000060 biolink:NamedThing instrument host The physical object upon or within which an instrument is mounted. SLSO_relaxed.owl OBO:SDDO_3000071 biolink:NamedThing factor The role played by an entity as part of a scientific investigation such that levels of the measurement or observation of the entity are thought to bear upon the hypotheses being investigated. SLSO_relaxed.owl OBO:SDDO_3000086 biolink:NamedThing funder A role in which the bearer delivers financial support to enable some activity. SLSO_relaxed.owl OBO:SDDO_3000105 biolink:NamedThing investigator SLSO_relaxed.owl BFO:0000024 biolink:NamedThing fiat object SLSO_relaxed.owl BFO:0000040 biolink:NamedThing material entity An independent continuant [snap:IndependentContinuant] that is spatially extended whose identity is independent of that of other entities and can be maintained through time. Note: Material entity [snap:MaterialEntity] subsumes object [snap:Object], fiat object part [snap:FiatObjectPart], and object aggregate [snap:ObjectAggregate], which assume a three level theory of granularity, which is inadequate for some domains, such as biology.|An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. SLSO_relaxed.owl BFO:0000027 biolink:NamedThing object aggregate SLSO_relaxed.owl BFO:0000030 biolink:NamedThing object SLSO_relaxed.owl CHEBI:24431 biolink:NamedThing chemical entity A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. SLSO_relaxed.owl CHEBI:36342 biolink:NamedThing subatomic particle A particle smaller than an atom. SLSO_relaxed.owl OBO:CHMO_0000993 biolink:NamedThing portion of material An independent material continuant that is self-connected and retains its identity over time. SLSO_relaxed.owl ENVO:00000070 biolink:NamedThing human construction A construction that has been assembled by deliberate human effort. SLSO_relaxed.owl ENVO:00003074 biolink:NamedThing manufactured product A material entity that has been processed by humans or their technology in any way, including intermediate products as well as final products. SLSO_relaxed.owl ENVO:00010483 biolink:NamedThing environmental material A material entity which other material entities in an environmental system are primarily or partially composed of. SLSO_relaxed.owl ENVO:01000281 biolink:NamedThing layer A material entity which 1) is spatially continuous, 2) is composed of material of comparable thickness, composition, and physical properties, and 3) is physically distinct from adjacent portions of environmental material. SLSO_relaxed.owl ENVO:01000813 biolink:NamedThing astronomical body part A material part of an astronomical body. SLSO_relaxed.owl ENVO:01001813 biolink:NamedThing construction A material entity which has been assembled through the intentional, instinctual, or deliberately programmed efforts of an organism or machine. SLSO_relaxed.owl ExO:0000000 biolink:NamedThing exposure stressor An agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure_receptor during an exposure event. SLSO_relaxed.owl ExO:0000001 biolink:NamedThing exposure_receptor An entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during an exposure event. SLSO_relaxed.owl GENO:0000904 biolink:NamedThing organismal entity A material entity that is an organism, derived from an organism, or composed of organisms (e.g. a cell line, biosample, tissue culture, population, etc). SLSO_relaxed.owl IAO:0000178 biolink:NamedThing material information bearer A material entity in which a concretization of an information content entity inheres. SLSO_relaxed.owl NCBITaxon:1 biolink:NamedThing root SLSO_relaxed.owl OBI:0000047 biolink:NamedThing processed material Is a material entity that is created or changed during material processing. SLSO_relaxed.owl OBI:0000245 biolink:NamedThing organization An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members. SLSO_relaxed.owl OBI:0000835 biolink:NamedThing manufacturer A person or organization that has a manufacturer role SLSO_relaxed.owl OBI:0002076 biolink:NamedThing collection of specimens A material entity that has two or more specimens as its parts. SLSO_relaxed.owl OBI:0002989 biolink:NamedThing material supplier A person or organization that provides material supplies to other people or organizations. SLSO_relaxed.owl OBI:0100051 biolink:NamedThing specimen A material entity that has the specimen role. SLSO_relaxed.owl OGMS:0000045 biolink:NamedThing disorder A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease. SLSO_relaxed.owl OBO:OMRSE_00000033 biolink:NamedThing aggregate of organizations An object aggregate that is not itself an organization and whose members are only organizations that have some feature in common SLSO_relaxed.owl PCO:0000031 biolink:NamedThing organismal entity A material entity that is one or more organisms, viruses or viroids. SLSO_relaxed.owl PO:0025131 biolink:NamedThing plant anatomical entity An anatomical entity that is or was part of a plant. SLSO_relaxed.owl OBO:RBO_00000004 biolink:NamedThing tissue equivalent material Material presenting, when irradiated, interaction properties similar to those of soft tissue. SLSO_relaxed.owl OBO:RBO_00005003 biolink:NamedThing charged particle A particle with a positive or negative electric charge SLSO_relaxed.owl OBO:RBO_00005014 biolink:NamedThing radiation source A material entity which emits radiation SLSO_relaxed.owl OBO:RBO_00015000 biolink:NamedThing radiation That energy which is transferred in space and time as part of the process of radiation (ENVO:01001023). SLSO_relaxed.owl RO:0002577 biolink:NamedThing system A material entity consisting of multiple components that are causally integrated. SLSO_relaxed.owl OBO:SDDO_3000054 biolink:NamedThing hardware The mechanical, magnetic, electronic, and electrical equipment necessary for conducting an activity. SLSO_relaxed.owl OBO:SDDO_3000096 biolink:NamedThing feature A material entity that has characteristics that can be qualified or quantified through observation or experiment. SLSO_relaxed.owl OBO:SDDO_3000098 biolink:NamedThing facility A construction, permanent or temporary, on land, in air, space or water, where scientific research or measurements can be undertaken. SLSO_relaxed.owl UBERON:0000465 biolink:NamedThing material anatomical entity Anatomical entity that has mass. SLSO_relaxed.owl BFO:0000034 biolink:NamedThing function SLSO_relaxed.owl ENVO:01003001 biolink:NamedThing water-holding capacity A disposition of a material entity which is realised when it is saturated with liquid water. SLSO_relaxed.owl ENVO:2000015 biolink:NamedThing energy A disposition which is realized during the execution of work, the emission of heat, or the possession of mass. SLSO_relaxed.owl UBERON:0001062 biolink:NamedThing anatomical entity Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. SLSO_relaxed.owl foaf:Agent biolink:NamedThing SLSO_relaxed.owl BFO:0000182 biolink:NamedThing history SLSO_relaxed.owl ENVO:02500000 biolink:NamedThing environmental system process A process in which includes the components of an environmental system as participants. SLSO_relaxed.owl ExO:0000002 biolink:NamedThing exposure event An interaction between an exposure stressor and an exposure_receptor. SLSO_relaxed.owl GO:0003674 biolink:NamedThing molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. SLSO_relaxed.owl GO:0008150 biolink:NamedThing biological_process A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.|A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.|A process that emerges from two or more causally-connected macromolecular activities and has evolved to achieve a biological objective. SLSO_relaxed.owl OBO:RBO_00000123 biolink:NamedThing biological process SLSO_relaxed.owl OBO:RBO_00015006 biolink:NamedThing subatomic process Processes in which electrons or components of the atomic nucleus are participants. SLSO_relaxed.owl OBO:SDDO_3000044 biolink:NamedThing event Something observable that happened at a given time and place SLSO_relaxed.owl CHEBI:10545 biolink:NamedThing electron Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV. SLSO_relaxed.owl CHEBI:36338 biolink:NamedThing lepton Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin). SLSO_relaxed.owl CHEBI:36356 biolink:NamedThing muon Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.113428913(17) u, or 105.658389(34) MeV. SLSO_relaxed.owl CHEBI:138675 biolink:NamedThing gas molecular entity Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa). SLSO_relaxed.owl CHEBI:33579 biolink:NamedThing main group molecular entity A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table. SLSO_relaxed.owl CHEBI:33583 biolink:NamedThing noble gas molecular entity A main group molecular entity containing one or more atoms of any noble gas. SLSO_relaxed.owl CHEBI:33674 biolink:NamedThing s-block molecular entity An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element. SLSO_relaxed.owl CHEBI:33675 biolink:NamedThing p-block molecular entity A main group molecular entity that contains one or more atoms of a p-block element. SLSO_relaxed.owl CHEBI:13941 biolink:NamedThing carbamate SLSO_relaxed.owl CHEBI:37022 biolink:NamedThing amino-acid anion SLSO_relaxed.owl CHEBI:33558 biolink:NamedThing alpha-amino-acid anion An amino-acid anion obtained by deprotonation of any alpha-amino acid. SLSO_relaxed.owl CHEBI:15022 biolink:NamedThing electron donor SLSO_relaxed.owl CHEBI:17891 biolink:NamedThing donor A molecular entity that can transfer ("donate") an electron, a pair of electrons, an atom or a group to another molecular entity. SLSO_relaxed.owl CHEBI:39141 biolink:NamedThing Bronsted acid A molecular entity capable of donating a hydron to an acceptor (Bronsted base). SLSO_relaxed.owl CHEBI:39144 biolink:NamedThing Lewis base A molecular entity able to provide a pair of electrons and thus capable of forming a covalent bond with an electron-pair acceptor (Lewis acid), thereby producing a Lewis adduct. SLSO_relaxed.owl CHEBI:15339 biolink:NamedThing acceptor A molecular entity that can accept an electron, a pair of electrons, an atom or a group from another molecular entity. SLSO_relaxed.owl CHEBI:22695 biolink:NamedThing base A molecular entity having an available pair of electrons capable of forming a covalent bond with a hydron (Bronsted base) or with the vacant orbital of some other molecular entity (Lewis base). SLSO_relaxed.owl CHEBI:228364 biolink:NamedThing NMR chemical shift reference compound Any compound that produces a peak used to reference an NMR spectrum during data pre-processing. SLSO_relaxed.owl CHEBI:37527 biolink:NamedThing acid An acid is a molecular entity capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid). SLSO_relaxed.owl CHEBI:76413 biolink:NamedThing greenhouse gas SLSO_relaxed.owl CHEBI:78298 biolink:NamedThing environmental contaminant SLSO_relaxed.owl CHEBI:15377 biolink:NamedThing water SLSO_relaxed.owl CHEBI:33693 biolink:NamedThing oxygen hydride SLSO_relaxed.owl CHEBI:37176 biolink:NamedThing mononuclear parent hydride SLSO_relaxed.owl CHEBI:16134 biolink:NamedThing ammonia An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms. SLSO_relaxed.owl CHEBI:52625 biolink:NamedThing inorganic hydroxy compound SLSO_relaxed.owl CHEBI:15378 biolink:NamedThing hydron The general name for the hydrogen nucleus, to be used without regard to the hydrogen nuclear mass (either for hydrogen in its natural abundance or where it is not desired to distinguish between the isotopes). SLSO_relaxed.owl CHEBI:25414 biolink:NamedThing monoatomic monocation SLSO_relaxed.owl CHEBI:33251 biolink:NamedThing monoatomic hydrogen SLSO_relaxed.owl CHEBI:33252 biolink:NamedThing atomic nucleus A nucleus is the positively charged central portion of an atom, excluding the orbital electrons. SLSO_relaxed.owl CHEBI:30216 biolink:NamedThing alpha-particle Nucleus of the (4)He atom. SLSO_relaxed.owl OBO:RBO_00000010 biolink:NamedThing light ion An atomic nucleus, fully stripped of its orbital electrons, and containing 2, 3, 4, 5, or 6 protons. SLSO_relaxed.owl OBO:RBO_010012 biolink:NamedThing heavy ion An atomic nucleus, fully stripped of its orbital electrons, containing 2 or more protons. Nuclei containing between 2 protons (helium) and 6 protons (carbon) are sometimes referred to as light ions. SLSO_relaxed.owl CHEBI:60242 biolink:NamedThing monovalent inorganic cation An atom or small molecule with a positive charge that does not contain carbon in covalent linkage, with a valency of one. SLSO_relaxed.owl CHEBI:28938 biolink:NamedThing ammonium An onium cation obtained by protonation of ammonia. SLSO_relaxed.owl CHEBI:15379 biolink:NamedThing dioxygen SLSO_relaxed.owl CHEBI:16526 biolink:NamedThing carbon dioxide SLSO_relaxed.owl CHEBI:17997 biolink:NamedThing dinitrogen SLSO_relaxed.owl CHEBI:33309 biolink:NamedThing noble gas atom SLSO_relaxed.owl CHEBI:25362 biolink:NamedThing elemental molecule A molecule all atoms of which have the same atomic number. SLSO_relaxed.owl CHEBI:33263 biolink:NamedThing diatomic oxygen SLSO_relaxed.owl CHEBI:15841 biolink:NamedThing polypeptide A peptide containing ten or more amino acid residues. SLSO_relaxed.owl CHEBI:16670 biolink:NamedThing peptide Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc. SLSO_relaxed.owl CHEBI:33839 biolink:NamedThing macromolecule A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. SLSO_relaxed.owl CHEBI:33694 biolink:NamedThing biomacromolecule A macromolecule formed by a living organism. SLSO_relaxed.owl CHEBI:35107 biolink:NamedThing azane Saturated acyclic nitrogen hydrides having the general formula NnHn+2. SLSO_relaxed.owl CHEBI:23014 biolink:NamedThing carbon oxide SLSO_relaxed.owl CHEBI:64708 biolink:NamedThing one-carbon compound An organic molecular entity containing a single carbon atom (C1). SLSO_relaxed.owl CHEBI:28616 biolink:NamedThing carbamic acid A one-carbon compound that is ammonia in which one of the hydrogens is replaced by a carboxy group. Although carbamic acid derivatives are common, carbamic acid itself has never been synthesised. SLSO_relaxed.owl CHEBI:16541 biolink:NamedThing protein polypeptide chain A naturally occurring polypeptide synthesized at the ribosome. SLSO_relaxed.owl CHEBI:37622 biolink:NamedThing carboxamide An amide of a carboxylic acid, having the structure RC(=O)NR2. The term is used as a suffix in systematic name formation to denote the -C(=O)NH2 group including its carbon atom. SLSO_relaxed.owl CHEBI:50047 biolink:NamedThing organic amino compound A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups. SLSO_relaxed.owl CHEBI:33709 biolink:NamedThing amino acid A carboxylic acid containing one or more amino groups. SLSO_relaxed.owl CHEBI:33266 biolink:NamedThing diatomic nitrogen SLSO_relaxed.owl CHEBI:18248 biolink:NamedThing iron atom An iron group element atom that has atomic number 26. SLSO_relaxed.owl CHEBI:33356 biolink:NamedThing iron group element atom SLSO_relaxed.owl CHEBI:22221 biolink:NamedThing acyl group An organic group formed by removing one or more hydroxy groups from an oxoacid that has the general structure RkE(=O)l(OH)m (l =/= 0). Although the term is almost always applied to organic compounds, with carboxylic acid as the oxoacid, acyl groups can in principle be derived from other types of acids such as sulfonic acids or phosphonic acids. SLSO_relaxed.owl CHEBI:33247 biolink:NamedThing organic group Any substituent group or skeleton containing carbon. SLSO_relaxed.owl CHEBI:33708 biolink:NamedThing amino-acid residue When two or more amino acids combine to form a peptide, the elements of water are removed, and what remains of each amino acid is called an amino-acid residue. SLSO_relaxed.owl CHEBI:51446 biolink:NamedThing organic divalent group SLSO_relaxed.owl CHEBI:51447 biolink:NamedThing organic univalent group SLSO_relaxed.owl CHEBI:22563 biolink:NamedThing anion A monoatomic or polyatomic species having one or more elementary charges of the electron. SLSO_relaxed.owl CHEBI:24870 biolink:NamedThing ion A molecular entity having a net electric charge. SLSO_relaxed.owl CHEBI:24867 biolink:NamedThing monoatomic ion SLSO_relaxed.owl CHEBI:25699 biolink:NamedThing organic ion SLSO_relaxed.owl CHEBI:36358 biolink:NamedThing polyatomic ion An ion consisting of more than one atom. SLSO_relaxed.owl CHEBI:36914 biolink:NamedThing inorganic ion SLSO_relaxed.owl CHEBI:36916 biolink:NamedThing cation A monoatomic or polyatomic species having one or more elementary charges of the proton. SLSO_relaxed.owl CHEBI:33292 biolink:NamedThing fuel SLSO_relaxed.owl CHEBI:33893 biolink:NamedThing reagent A substance used in a chemical reaction to detect, measure, examine, or produce other substances. SLSO_relaxed.owl CHEBI:78433 biolink:NamedThing refrigerant A substance used in a thermodynamic heat pump cycle or refrigeration cycle that undergoes a phase change from a gas to a liquid and back. Refrigerants are used in air-conditioning systems and freezers or refrigerators and are assigned a "R" number (by ASHRAE - formerly the American Society of Heating, Refrigerating and Air Conditioning Engineers), which is determined systematically according to their molecular structure. SLSO_relaxed.owl CHEBI:23004 biolink:NamedThing carbamoyl group The univalent carboacyl group formed by loss of -OH from the carboxy group of carbamic acid. SLSO_relaxed.owl CHEBI:27207 biolink:NamedThing univalent carboacyl group A univalent carboacyl group is a group formed by loss of OH from the carboxy group of a carboxylic acid. SLSO_relaxed.owl CHEBI:25701 biolink:NamedThing organic oxide SLSO_relaxed.owl CHEBI:36963 biolink:NamedThing organooxygen compound An organochalcogen compound containing at least one carbon-oxygen bond. SLSO_relaxed.owl CHEBI:35605 biolink:NamedThing carbon oxoacid SLSO_relaxed.owl CHEBI:36586 biolink:NamedThing carbonyl compound Any compound containing the carbonyl group, C=O. The term is commonly used in the restricted sense of aldehydes and ketones, although it actually includes carboxylic acids and derivatives. SLSO_relaxed.owl CHEBI:23019 biolink:NamedThing carbonyl group SLSO_relaxed.owl CHEBI:51422 biolink:NamedThing organodiyl group Any organic substituent group, regardless of functional type, having two free valences at carbon atom(s). SLSO_relaxed.owl CHEBI:23114 biolink:NamedThing chloride salt SLSO_relaxed.owl CHEBI:23117 biolink:NamedThing chlorine molecular entity SLSO_relaxed.owl CHEBI:33958 biolink:NamedThing halide salt SLSO_relaxed.owl CHEBI:24471 biolink:NamedThing halogen molecular entity SLSO_relaxed.owl CHEBI:37578 biolink:NamedThing halide SLSO_relaxed.owl CHEBI:23357 biolink:NamedThing cofactor An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group). SLSO_relaxed.owl CHEBI:52206 biolink:NamedThing biochemical role A biological role played by the molecular entity or part thereof within a biochemical context. SLSO_relaxed.owl CHEBI:23924 biolink:NamedThing enzyme inhibitor A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction. SLSO_relaxed.owl CHEBI:25212 biolink:NamedThing metabolite Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites. SLSO_relaxed.owl CHEBI:23367 biolink:NamedThing molecular entity Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity. SLSO_relaxed.owl CHEBI:24433 biolink:NamedThing group A defined linked collection of atoms or a single atom within a molecular entity. SLSO_relaxed.owl CHEBI:33250 biolink:NamedThing atom A chemical entity constituting the smallest component of an element having the chemical properties of the element. SLSO_relaxed.owl CHEBI:59999 biolink:NamedThing chemical substance A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types. SLSO_relaxed.owl CHEBI:23906 biolink:NamedThing monoatomic cation SLSO_relaxed.owl CHEBI:25697 biolink:NamedThing organic cation Any organic ion with a net positive charge. SLSO_relaxed.owl CHEBI:33702 biolink:NamedThing polyatomic cation A cation consisting of more than one atom. SLSO_relaxed.owl CHEBI:36915 biolink:NamedThing inorganic cation SLSO_relaxed.owl CHEBI:35222 biolink:NamedThing inhibitor A substance that diminishes the rate of a chemical reaction. SLSO_relaxed.owl CHEBI:33302 biolink:NamedThing pnictogen molecular entity A p-block molecular entity containing any pnictogen. SLSO_relaxed.owl CHEBI:33304 biolink:NamedThing chalcogen molecular entity Any p-block molecular entity containing a chalcogen. SLSO_relaxed.owl CHEBI:33582 biolink:NamedThing carbon group molecular entity SLSO_relaxed.owl CHEBI:24636 biolink:NamedThing proton Nuclear particle of charge number +1, spin 1/2 and rest mass of 1.007276470(12) u. SLSO_relaxed.owl CHEBI:33253 biolink:NamedThing nucleon Heavy nuclear particle: proton or neutron. SLSO_relaxed.owl CHEBI:30222 biolink:NamedThing neutron Nuclear particle of zero charge, spin 1/2 and rest mass of 1.008664904(14) u. SLSO_relaxed.owl CHEBI:24651 biolink:NamedThing hydroxides Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)). SLSO_relaxed.owl CHEBI:25806 biolink:NamedThing oxygen molecular entity SLSO_relaxed.owl CHEBI:25741 biolink:NamedThing oxide An oxide is a chemical compound of oxygen with other chemical elements. SLSO_relaxed.owl CHEBI:33262 biolink:NamedThing elemental oxygen SLSO_relaxed.owl CHEBI:33608 biolink:NamedThing hydrogen molecular entity SLSO_relaxed.owl CHEBI:33260 biolink:NamedThing elemental hydrogen SLSO_relaxed.owl CHEBI:33692 biolink:NamedThing hydrides Hydrides are chemical compounds of hydrogen with other chemical elements. SLSO_relaxed.owl CHEBI:37577 biolink:NamedThing heteroatomic molecular entity A molecular entity consisting of two or more chemical elements. SLSO_relaxed.owl CHEBI:24866 biolink:NamedThing salt A salt is an assembly of cations and anions. SLSO_relaxed.owl CHEBI:50312 biolink:NamedThing onium compound SLSO_relaxed.owl CHEBI:24833 biolink:NamedThing oxoacid A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons). SLSO_relaxed.owl CHEBI:24834 biolink:NamedThing inorganic anion SLSO_relaxed.owl CHEBI:25696 biolink:NamedThing organic anion Any organic ion with a net negative charge. SLSO_relaxed.owl CHEBI:33273 biolink:NamedThing polyatomic anion An anion consisting of more than one atom. SLSO_relaxed.owl CHEBI:24835 biolink:NamedThing inorganic molecular entity A molecular entity that contains no carbon. SLSO_relaxed.owl CHEBI:33259 biolink:NamedThing elemental molecular entity A molecular entity all atoms of which have the same atomic number. SLSO_relaxed.owl CHEBI:33497 biolink:NamedThing transition element molecular entity A molecular entity containing one or more atoms of a transition element. SLSO_relaxed.owl CHEBI:36357 biolink:NamedThing polyatomic entity Any molecular entity consisting of more than one atom. SLSO_relaxed.owl CHEBI:24839 biolink:NamedThing inorganic salt SLSO_relaxed.owl CHEBI:33242 biolink:NamedThing inorganic hydride SLSO_relaxed.owl CHEBI:33465 biolink:NamedThing elemental pnictogen SLSO_relaxed.owl CHEBI:49637 biolink:NamedThing hydrogen atom SLSO_relaxed.owl CHEBI:35479 biolink:NamedThing alkali metal salt SLSO_relaxed.owl CHEBI:33238 biolink:NamedThing monoatomic entity A monoatomic entity is a molecular entity consisting of a single atom. SLSO_relaxed.owl CHEBI:33315 biolink:NamedThing monoatomic helium SLSO_relaxed.owl CHEBI:24873 biolink:NamedThing iron molecular entity SLSO_relaxed.owl CHEBI:33744 biolink:NamedThing iron group molecular entity SLSO_relaxed.owl CHEBI:25367 biolink:NamedThing molecule Any polyatomic entity that is an electrically neutral entity consisting of more than one atom. SLSO_relaxed.owl CHEBI:72695 biolink:NamedThing organic molecule Any molecule that consists of at least one carbon atom as part of the electrically neutral entity. SLSO_relaxed.owl CHEBI:30412 biolink:NamedThing monoatomic dication SLSO_relaxed.owl CHEBI:25555 biolink:NamedThing nitrogen atom SLSO_relaxed.owl CHEBI:25585 biolink:NamedThing nonmetal atom SLSO_relaxed.owl CHEBI:25805 biolink:NamedThing oxygen atom SLSO_relaxed.owl CHEBI:27594 biolink:NamedThing carbon atom SLSO_relaxed.owl CHEBI:33300 biolink:NamedThing pnictogen Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth. SLSO_relaxed.owl CHEBI:33318 biolink:NamedThing main group element atom An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table. SLSO_relaxed.owl CHEBI:33521 biolink:NamedThing metal atom An atom of an element that exhibits typical metallic properties, being typically shiny, with high electrical and thermal conductivity. SLSO_relaxed.owl CHEBI:33559 biolink:NamedThing s-block element atom SLSO_relaxed.owl OBO:RBO_00000060 biolink:NamedThing radionuclide Isotopes that exhibit radioactivity and undergo radioactive decay. (From Grant & Hackh's Chemical Dictionary, 5th ed & McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed) SLSO_relaxed.owl CHEBI:50860 biolink:NamedThing organic molecular entity Any molecular entity that contains carbon. SLSO_relaxed.owl CHEBI:33285 biolink:NamedThing heteroorganic entity A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms. SLSO_relaxed.owl CHEBI:64709 biolink:NamedThing organic acid Any organic molecular entity that is acidic and contains carbon in covalent linkage. SLSO_relaxed.owl CHEBI:35406 biolink:NamedThing oxoanion An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen. SLSO_relaxed.owl CHEBI:36587 biolink:NamedThing organic oxo compound Organic compounds containing an oxygen atom, =O, doubly bonded to carbon or another element. SLSO_relaxed.owl CHEBI:51151 biolink:NamedThing dipolar compound An organic molecule that is electrically neutral carrying a positive and a negative charge in one of its major canonical descriptions. In most dipolar compounds the charges are delocalized; however the term is also applied to species where this is not the case. SLSO_relaxed.owl CHEBI:33303 biolink:NamedThing chalcogen Any p-block element belonging to the group 16 family of the periodic table. SLSO_relaxed.owl CHEBI:36902 biolink:NamedThing chalcogen hydride SLSO_relaxed.owl CHEBI:36962 biolink:NamedThing organochalcogen compound An organochalcogen compound is a compound containing at least one carbon-chalcogen bond. SLSO_relaxed.owl CHEBI:26710 biolink:NamedThing sodium chloride SLSO_relaxed.owl CHEBI:36093 biolink:NamedThing inorganic chloride SLSO_relaxed.owl CHEBI:38702 biolink:NamedThing inorganic sodium salt SLSO_relaxed.owl CHEBI:26712 biolink:NamedThing sodium molecular entity SLSO_relaxed.owl CHEBI:33296 biolink:NamedThing alkali metal molecular entity A molecular entity containing one or more atoms of an alkali metal. SLSO_relaxed.owl CHEBI:26714 biolink:NamedThing sodium salt SLSO_relaxed.owl CHEBI:27081 biolink:NamedThing transition element atom An element whose atom has an incomplete d sub-shell, or which can give rise to cations with an incomplete d sub-shell. SLSO_relaxed.owl CHEBI:37838 biolink:NamedThing carboacyl group A carboacyl group is a group formed by loss of at least one OH from the carboxy group of a carboxylic acid. SLSO_relaxed.owl CHEBI:27369 biolink:NamedThing zwitterion A neutral compound having formal unit electrical charges of opposite sign on non-adjacent atoms. Sometimes referred to as inner salts, dipolar ions (a misnomer). SLSO_relaxed.owl CHEBI:33306 biolink:NamedThing carbon group element atom SLSO_relaxed.owl CHEBI:35352 biolink:NamedThing organonitrogen compound Any heteroorganic entity containing at least one carbon-nitrogen bond. SLSO_relaxed.owl CHEBI:33575 biolink:NamedThing carboxylic acid A carbon oxoacid acid carrying at least one -C(=O)OH group and having the structure RC(=O)OH, where R is any any monovalent functional group. Carboxylic acids are the most common type of organic acid. SLSO_relaxed.owl CHEBI:35106 biolink:NamedThing nitrogen hydride SLSO_relaxed.owl CHEBI:29337 biolink:NamedThing azanide SLSO_relaxed.owl CHEBI:29340 biolink:NamedThing hydridonitrate(2-) A divalent inorganic anion resulting from the removal of two protons from ammonia. SLSO_relaxed.owl CHEBI:50313 biolink:NamedThing onium cation Mononuclear cations derived by addition of a hydron to a mononuclear parent hydride of the pnictogen, chalcogen and halogen families. SLSO_relaxed.owl CHEBI:29067 biolink:NamedThing carboxylic acid anion The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated. SLSO_relaxed.owl CHEBI:79389 biolink:NamedThing monovalent inorganic anion Any inorganic anion with a valency of one. SLSO_relaxed.owl CHEBI:79388 biolink:NamedThing divalent inorganic anion Any inorganic anion with a valency of two. SLSO_relaxed.owl CHEBI:30212 biolink:NamedThing photon Particle of zero charge, zero rest mass, spin quantum number 1, energy hnu and momentum hnu/c (h is the Planck constant, nu the frequency of radiation and c the speed of light), carrier of electromagnetic force. SLSO_relaxed.owl CHEBI:36341 biolink:NamedThing boson Particle of integer spin quantum number following Bose-Einstein statistics. Bosons are named after Satyendra Nath Bose. SLSO_relaxed.owl CHEBI:36345 biolink:NamedThing meson A hadron with zero or integer spin; a strongly interacting boson. The term is derived from the Greek muepsilonsigmaomicronsigma (medium, middle). SLSO_relaxed.owl CHEBI:33316 biolink:NamedThing helium(2+) SLSO_relaxed.owl CHEBI:30217 biolink:NamedThing helium atom SLSO_relaxed.owl CHEBI:33314 biolink:NamedThing radon atom SLSO_relaxed.owl CHEBI:32988 biolink:NamedThing amide An amide is a derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group. SLSO_relaxed.owl CHEBI:51143 biolink:NamedThing nitrogen molecular entity SLSO_relaxed.owl CHEBI:33267 biolink:NamedThing elemental nitrogen SLSO_relaxed.owl CHEBI:33233 biolink:NamedThing fundamental particle A particle not known to have substructure. SLSO_relaxed.owl CHEBI:36340 biolink:NamedThing fermion Particle of half-integer spin quantum number following Fermi-Dirac statistics. Fermions are named after Enrico Fermi. SLSO_relaxed.owl CHEBI:36343 biolink:NamedThing composite particle A subatomic particle known to have substructure (i.e. consisting of smaller particles). SLSO_relaxed.owl CHEBI:36347 biolink:NamedThing nuclear particle A nucleus or any of its constituents in any of their energy states. SLSO_relaxed.owl CHEBI:33246 biolink:NamedThing inorganic group Any substituent group which does not contain carbon. SLSO_relaxed.owl CHEBI:64766 biolink:NamedThing cationic group A group that carries an overall positive charge. SLSO_relaxed.owl CHEBI:64767 biolink:NamedThing anionic group A group that carries an overall negative charge. SLSO_relaxed.owl CHEBI:33249 biolink:NamedThing organyl group Any organic substituent group, regardless of functional type, having one free valence at a carbon atom. SLSO_relaxed.owl OBO:RBO_00005036 biolink:NamedThing highly charged energetic nucleus Fully ionized atomic nucleus with 2 or more protons and energies in excess of tens of MeV per nucleon SLSO_relaxed.owl CHEBI:36339 biolink:NamedThing baryon Baryon is a fermion that does experience the strong force (strong interaction). The term is derived from the Greek betaalpharhoupsilonsigma (heavy). SLSO_relaxed.owl CHEBI:33256 biolink:NamedThing primary amide A derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group. SLSO_relaxed.owl CHEBI:33284 biolink:NamedThing nutrient A nutrient is a food component that an organism uses to survive and grow. SLSO_relaxed.owl CHEBI:78295 biolink:NamedThing food component A physiological role played by any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants. SLSO_relaxed.owl CHEBI:33679 biolink:NamedThing helium molecular entity SLSO_relaxed.owl CHEBI:33560 biolink:NamedThing p-block element atom Any main group element atom belonging to the p-block of the periodic table. SLSO_relaxed.owl CHEBI:33680 biolink:NamedThing elemental helium SLSO_relaxed.owl CHEBI:33561 biolink:NamedThing d-block element atom SLSO_relaxed.owl CHEBI:35881 biolink:NamedThing pnictogen hydride SLSO_relaxed.owl CHEBI:33498 biolink:NamedThing actinoid molecular entity SLSO_relaxed.owl CHEBI:33677 biolink:NamedThing f-block molecular entity SLSO_relaxed.owl CHEBI:33499 biolink:NamedThing uranium molecular entity SLSO_relaxed.owl CHEBI:33676 biolink:NamedThing d-block molecular entity A d-block molecular entity is a molecular entity containing one or more atoms of a d-block element. SLSO_relaxed.owl CHEBI:36908 biolink:NamedThing argon molecular entity SLSO_relaxed.owl CHEBI:33695 biolink:NamedThing information biomacromolecule SLSO_relaxed.owl CHEBI:33700 biolink:NamedThing proteinogenic amino-acid residue SLSO_relaxed.owl CHEBI:33710 biolink:NamedThing alpha-amino-acid residue An amino-acid residue derived from an alpha-amino acid. SLSO_relaxed.owl CHEBI:33703 biolink:NamedThing amino-acid cation SLSO_relaxed.owl CHEBI:33704 biolink:NamedThing alpha-amino acid An amino acid in which the amino group is located on the carbon atom at the position alpha to the carboxy group. SLSO_relaxed.owl CHEBI:33719 biolink:NamedThing alpha-amino-acid cation SLSO_relaxed.owl CHEBI:33745 biolink:NamedThing copper group molecular entity SLSO_relaxed.owl CHEBI:33747 biolink:NamedThing nickel group molecular entity SLSO_relaxed.owl CHEBI:33749 biolink:NamedThing platinum molecular entity SLSO_relaxed.owl CHEBI:33937 biolink:NamedThing macronutrient Any nutrient required in large quantities by organisms throughout their life in order to orchestrate a range of physiological functions. Macronutrients are usually chemical elements (carbon, hydrogen, nitrogen, oxygen, phosphorus and sulfur) that humans consume in the largest quantities. Calcium, sodium, magnesium and potassium are sometimes included as macronutrients because they are required in relatively large quantities compared with other vitamins and minerals. SLSO_relaxed.owl CHEBI:33969 biolink:NamedThing gold molecular entity SLSO_relaxed.owl CHEBI:52209 biolink:NamedThing aetiopathogenetic role A role played by the molecular entity or part thereof which causes the development of a pathological process. SLSO_relaxed.owl CHEBI:52211 biolink:NamedThing physiological role SLSO_relaxed.owl CHEBI:64909 biolink:NamedThing poison Any substance that causes disturbance to organisms by chemical reaction or other activity on the molecular scale, when a sufficient quantity is absorbed by the organism. SLSO_relaxed.owl OBO:RBO_00000070 biolink:NamedThing radioprotectant A substance present at the time of irradiation that mitigates or prevents the biological effects of irradiation. SLSO_relaxed.owl OBO:RBO_00000071 biolink:NamedThing radionuclide chelator Radionuclide chelators are small organic molecules or in some cases larger peptides that chemically sequester the radionuclide ion by forming a complex that determines the thermodynamic stability and kinetic inertness of the radionuclide. SLSO_relaxed.owl OBO:RBO_00000072 biolink:NamedThing co-carcinogen A co-carcinogen is generally a chemical that promotes the effects of a carcinogen in the production of cancer. In some circumstances exposure to radiation or physical trauma is considered to be co-carcinogenic. SLSO_relaxed.owl OBO:RBO_00000073 biolink:NamedThing radiation response modifier Radiation response modifiers are agents that alter tumor or normal tissue response to radiation, such as radiation sensitizers and radiation protectors. SLSO_relaxed.owl CHEBI:35230 biolink:NamedThing fossil fuel SLSO_relaxed.owl CHEBI:35238 biolink:NamedThing amino acid zwitterion The zwitterionic form of an amino acid having a negatively charged carboxyl group and a positively charged amino group. SLSO_relaxed.owl CHEBI:60466 biolink:NamedThing peptide zwitterion Zwitterionic form of any peptide where, in general, the amino terminus is positively charged and the carboxy terminus is negatively charged. SLSO_relaxed.owl CHEBI:36080 biolink:NamedThing protein A biological macromolecule minimally consisting of one polypeptide chain synthesized at the ribosome. SLSO_relaxed.owl CHEBI:36344 biolink:NamedThing hadron Hadron is a subatomic particle which experiences the strong force. SLSO_relaxed.owl CHEBI:36348 biolink:NamedThing pi meson The collective name for zero-spin mesons pi(+), pi(-) and pi(0). SLSO_relaxed.owl CHEBI:39142 biolink:NamedThing Bronsted base A molecular entity capable of accepting a hydron from a donor (Bronsted acid). SLSO_relaxed.owl CHEBI:43176 biolink:NamedThing hydroxy group SLSO_relaxed.owl CHEBI:46629 biolink:NamedThing oxo group SLSO_relaxed.owl CHEBI:46662 biolink:NamedThing mineral In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals'). SLSO_relaxed.owl CHEBI:46883 biolink:NamedThing carboxy group SLSO_relaxed.owl CHEBI:50910 biolink:NamedThing neurotoxin A poison that interferes with the functions of the nervous system. SLSO_relaxed.owl CHEBI:58942 biolink:NamedThing cationic amino-acid residue An amino-acid residue protonated on nitrogen. SLSO_relaxed.owl CHEBI:64769 biolink:NamedThing organic cationic group A cationic group that contains carbon. SLSO_relaxed.owl CHEBI:59740 biolink:NamedThing nucleophilic reagent A reagent that forms a bond to its reaction partner (the electrophile) by donating both bonding electrons. SLSO_relaxed.owl CHEBI:64775 biolink:NamedThing organic anionic group An anionic group that contains carbon. SLSO_relaxed.owl CHEBI:64898 biolink:NamedThing anionic amino-acid residue An amino-acid residue carrying an overall negative charge. SLSO_relaxed.owl CHEBI:75763 biolink:NamedThing eukaryotic metabolite Any metabolite produced during a metabolic reaction in eukaryotes, the taxon that include members of the fungi, plantae and animalia kingdoms. SLSO_relaxed.owl CHEBI:75787 biolink:NamedThing prokaryotic metabolite Any metabolite produced during a metabolic reaction in prokaryotes, the taxon that include members of domains such as the bacteria and archaea. SLSO_relaxed.owl CHEBI:75767 biolink:NamedThing animal metabolite Any eukaryotic metabolite produced during a metabolic reaction in animals that include diverse creatures from sponges, insects to mammals. SLSO_relaxed.owl CHEBI:76946 biolink:NamedThing fungal metabolite Any eukaryotic metabolite produced during a metabolic reaction in fungi, the kingdom that includes microorganisms such as the yeasts and moulds. SLSO_relaxed.owl CHEBI:75768 biolink:NamedThing mammalian metabolite Any animal metabolite produced during a metabolic reaction in mammals. SLSO_relaxed.owl CHEBI:75771 biolink:NamedThing mouse metabolite Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus). SLSO_relaxed.owl CHEBI:77746 biolink:NamedThing human metabolite Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens). SLSO_relaxed.owl CHEBI:75772 biolink:NamedThing Saccharomyces cerevisiae metabolite Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae). SLSO_relaxed.owl CHEBI:76759 biolink:NamedThing EC 3.* (hydrolase) inhibitor Any enzyme inhibitor that interferes with the action of a hydrolase (EC 3.*.*.*). SLSO_relaxed.owl CHEBI:76764 biolink:NamedThing EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor Any hydrolase inhibitor that interferes with the action of a hydrolase acting on C-N bonds, other than peptide bonds (EC 3.5.*.*). SLSO_relaxed.owl CHEBI:76807 biolink:NamedThing EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor An EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor that interferes with the action of any non-peptide linear amide C-N hydrolase (EC 3.5.1.*). SLSO_relaxed.owl CHEBI:76969 biolink:NamedThing bacterial metabolite Any prokaryotic metabolite produced during a metabolic reaction in bacteria. SLSO_relaxed.owl CHEBI:76971 biolink:NamedThing Escherichia coli metabolite Any bacterial metabolite produced during a metabolic reaction in Escherichia coli. SLSO_relaxed.owl CHEBI:77941 biolink:NamedThing EC 3.5.1.4 (amidase) inhibitor An EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor that interferes with the action of amidase (EC 3.5.1.4). SLSO_relaxed.owl CHEBI:78608 biolink:NamedThing alpha-amino acid zwitterion An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3. SLSO_relaxed.owl OBO:CHMO_0002793 biolink:NamedThing sensor A piece of apparatus that is used to measure a physical quantity. SLSO_relaxed.owl OBI:0000968 biolink:NamedThing device A material entity that is designed to perform a function in a scientific investigation, but is not a reagent. SLSO_relaxed.owl OBI:0001032 biolink:NamedThing light emission device A device which has a function to emit light. SLSO_relaxed.owl OBI:0001138 biolink:NamedThing X-ray source A device that is used to generate X-rays. SLSO_relaxed.owl OBO:RBO_00000033 biolink:NamedThing spacecraft Vehicles, crewed or uncrewed, which are designed to orbit about the Earth or another celestial body or be placed into a trajectory to another celestial body or location in space. SLSO_relaxed.owl OBO:RBO_00000115 biolink:NamedThing radiation dosimeter device A device that is used to measure the amount of ionizing radiation exposure or absorption. SLSO_relaxed.owl OBO:RBO_00000121 biolink:NamedThing particle accelerator A device used to impart kinetic energy to subatomic particles by means of electric and magnetic fields SLSO_relaxed.owl OBO:RBO_00000122 biolink:NamedThing nuclear reactor A device in which nuclear fission may be initiated and controlled in a self-sustaining chain reaction to generate energy or produce useful radiation. SLSO_relaxed.owl OBO:SLSO_0000037 biolink:NamedThing hardware A physical, manufactured or otherwise processed object that is used in a scientific investigation or clinical activity. SLSO_relaxed.owl OBO:CHMO_0002796 biolink:NamedThing dosimetry Measurement of the dose of a substance taken up by an object. SLSO_relaxed.owl OBO:CHMO_0002797 biolink:NamedThing dosimeter A sensor that is used to measure the dose of a substance taken by up an object. SLSO_relaxed.owl ENVO:00000000 biolink:NamedThing geographic feature An astrononmical body part which delimited by physical discontinuities with its surroundings. SLSO_relaxed.owl ENVO:00000191 biolink:NamedThing solid astronomical body part A part of an astronomical body which is primarily composed of solid material. SLSO_relaxed.owl ENVO:00000428 biolink:NamedThing biome A biome is an ecosystem which is undergoing climactic ecological succession. SLSO_relaxed.owl ENVO:00001998 biolink:NamedThing soil An environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, interstitial gases, liquids, and a broad range of resident micro- and macroorganisms. SLSO_relaxed.owl ENVO:00002206 biolink:NamedThing coal mine waste material SLSO_relaxed.owl ENVO:00005800 biolink:NamedThing desert sand Sand which is part of a desert. SLSO_relaxed.owl ENVO:01000276 biolink:NamedThing ecoregion A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions. SLSO_relaxed.owl ENVO:01000280 biolink:NamedThing ecozone Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration. SLSO_relaxed.owl ENVO:01000320 biolink:NamedThing marine environment A marine environment and enviroment which is determined by a marine water body. SLSO_relaxed.owl ENVO:01000352 biolink:NamedThing field An unbroken expanse (as of ice) SLSO_relaxed.owl ENVO:01000639 biolink:NamedThing planetary structural layer A planetary structural layer is laminar part of a terrestrial planet or other rocky body large enough to have differentiation by density. Planetary layers have differing physicochemical properties and composition. SLSO_relaxed.owl ENVO:01000739 biolink:NamedThing habitat An environmental system which can sustain and allow the growth of an ecological population. SLSO_relaxed.owl ENVO:01000817 biolink:NamedThing biosphere An astronomical body part which includes all the living entities within the gravitational sphere of influence of that body, as well as the non-living and dead entities with which they interact. SLSO_relaxed.owl ENVO:01000820 biolink:NamedThing pedosphere An astronomical body part which is composed of soil, subject to soil formation processes, and found on the surface of a lithosphere. SLSO_relaxed.owl ENVO:01000983 biolink:NamedThing technosphere A part of an astronomical body which includes, as parts, all the entities which have been constructed or manufactured by humans or their technology and which are within the gravitational sphere of influence of that body. SLSO_relaxed.owl ENVO:01001044 biolink:NamedThing soil environment An environmental system which has its properties and dynamics determined by soil. SLSO_relaxed.owl ENVO:01001199 biolink:NamedThing terrestrial environmental zone An environmental zone which is bounded by material parts of a land mass or the atmosphere or space adjacent to it. SLSO_relaxed.owl ENVO:01001226 biolink:NamedThing terrestrial natural environment A natural environment which is located on a land mass. SLSO_relaxed.owl ENVO:01001227 biolink:NamedThing aquatic natural environment A natural environment which is within a water body. SLSO_relaxed.owl ENVO:01001239 biolink:NamedThing forest canopy SLSO_relaxed.owl ENVO:01001240 biolink:NamedThing woodland canopy A canopy which is part of a woodland ecosystem. SLSO_relaxed.owl ENVO:01001241 biolink:NamedThing crop canopy A canopy which is composed of the aboveground portion, or crowns, of a community of crop plants. SLSO_relaxed.owl ENVO:01001479 biolink:NamedThing fluid astronomical body part A part of an astronomical body which is primarily composed of fluid. SLSO_relaxed.owl ENVO:01001483 biolink:NamedThing surface of an astronomical body A surface layer where the solid or liquid material of an astronomical body comes into contact with an atmosphere or outer space. SLSO_relaxed.owl ENVO:01001609 biolink:NamedThing cryospheric layer A layer which is part of a cryosphere. SLSO_relaxed.owl ENVO:01001776 biolink:NamedThing subsurface zone of an astronomical body An environmental zone which includes those regions of an astronomical body which are not exposed to its atmosphere or space. SLSO_relaxed.owl ENVO:01001780 biolink:NamedThing desert ecosystem An ecosystem in which the composition, structure, and function of resident ecological assemblages are primarily determined by a desert. SLSO_relaxed.owl ENVO:01001784 biolink:NamedThing compound astronomical body part A part of an astronomical body which is composed of a continuous medium bearing liquid, gaseous, and solid material in variable quantities. SLSO_relaxed.owl ENVO:01001787 biolink:NamedThing aquatic ecosystem SLSO_relaxed.owl ENVO:01001790 biolink:NamedThing terrestrial ecosystem An ecosystem which primarily occurs on land. SLSO_relaxed.owl ENVO:01001829 biolink:NamedThing human settlement An anthropised ecosystem which is determined by the presence of humans and their constructions. SLSO_relaxed.owl ENVO:03000143 biolink:NamedThing cryosphere An astronomical body part which is composed primarily of environmental materials in their frozen form. SLSO_relaxed.owl ENVO:04000008 biolink:NamedThing soil organic matter Organic material in soil, which consists of plant and animal residues at various stages of decomposition, cells and tissues of soil organisms, and substances synthesized by soil organisms. SLSO_relaxed.owl ENVO:00000002 biolink:NamedThing anthropogenic geographic feature An anthropogenic geographic feature is a geographic feature resulting from the influence of human beings on nature. SLSO_relaxed.owl ENVO:00000012 biolink:NamedThing hydrographic feature A geographical feature associated with water. SLSO_relaxed.owl ENVO:00000003 biolink:NamedThing mine tailing Mine tailings are the materials left over after the process of separating the valuable fraction from the uneconomic fraction (gangue) of an ore. SLSO_relaxed.owl ENVO:0010001 biolink:NamedThing anthropogenic environmental material Anthropogenic material in or on which organisms may live. SLSO_relaxed.owl ENVO:01000458 biolink:NamedThing concrete Concrete is a composite material composed of an aggregate bonded together with a fluid cement which hardens over time. SLSO_relaxed.owl ENVO:01000462 biolink:NamedThing masonry cement Masonry cement is a substance used in construction that has the disposition to set and harden and thus may be used to bind materials together. SLSO_relaxed.owl ENVO:01000474 biolink:NamedThing brick material A portion of brick material is a material derived from a brick which is composed of kneaded clay-bearing soil, expanded clay aggregate, sand and lime, or concrete that has been fire-hardened or air-dried. SLSO_relaxed.owl ENVO:00000010 biolink:NamedThing transport feature A construction which enables the movement of humans, their animals or their vehicles. SLSO_relaxed.owl ENVO:00000073 biolink:NamedThing building A permanent walled and roofed construction. SLSO_relaxed.owl ENVO:00000076 biolink:NamedThing mine An excavation in the Earth for the purpose of extracting earth materials. SLSO_relaxed.owl ENVO:00000469 biolink:NamedThing research facility A facility, permanent or temporary, on land, in air, space or water, where scientific research or measurements can be undertaken. SLSO_relaxed.owl ENVO:01000420 biolink:NamedThing building part A building part is a construction which is part of a building. SLSO_relaxed.owl ENVO:01000779 biolink:NamedThing public infrastructure The system of public works in a country, state or region, including roads, utility lines and public buildings. SLSO_relaxed.owl ENVO:02000133 biolink:NamedThing nuclear reactor A human construction which is used to initiate and control a fission nuclear chain reaction or nuclear fusion reactions. SLSO_relaxed.owl ENVO:03501134 biolink:NamedThing healthcare facility A human construction in which healthcare is provided. SLSO_relaxed.owl ENVO:03600014 biolink:NamedThing pipeline network A human construction which is used to transport a material which is primarily composed of liquid or gas through a system of pipes. SLSO_relaxed.owl ENVO:03600021 biolink:NamedThing tailings pond A human construction which is used as a storage area for mining tailings. SLSO_relaxed.owl ENVO:01000254 biolink:NamedThing environmental system A system which has the disposition to environ one or more material entities. SLSO_relaxed.owl ENVO:00000015 biolink:NamedThing ocean A marine water body which is constitutes the majority of an astronomical body's hydrosphere. SLSO_relaxed.owl ENVO:00001999 biolink:NamedThing marine water body A lentic water body which is composed primarily of marine water. SLSO_relaxed.owl ENVO:00000016 biolink:NamedThing sea A large expanse of saline water usually connected with an ocean. SLSO_relaxed.owl ENVO:01001319 biolink:NamedThing saline water body A body of water which is primarily composed of saline water. SLSO_relaxed.owl ENVO:00000019 biolink:NamedThing saline lake A lake whose water contains a considerable concentration of dissolved salts. SLSO_relaxed.owl ENVO:00000017 biolink:NamedThing saline hydrographic feature A geographical feature associated with water with a halinity above 30 ppt (roughly 35 g/L). SLSO_relaxed.owl ENVO:00000020 biolink:NamedThing lake A body of water or other liquid of considerable size contained in a depression on a landmass. SLSO_relaxed.owl ENVO:01000680 biolink:NamedThing polluted lake A lake which has concentrations of environmental contaminants high enough to harm the ecosystems associated with it. SLSO_relaxed.owl ENVO:01001022 biolink:NamedThing natural lake A lake which has formed as the result of processes that are not or are only minimally driven by human activity. SLSO_relaxed.owl ENVO:01000617 biolink:NamedThing lentic water body A lentic water body is a water body in which the accumulated water, in its totality, has very little to no directed flow. SLSO_relaxed.owl ENVO:00000028 biolink:NamedThing sand pit quarry A quarry from which sand is extracted. SLSO_relaxed.owl ENVO:00000284 biolink:NamedThing quarry An open-pit mine from which rock or minerals are extracted. SLSO_relaxed.owl ENVO:00000043 biolink:NamedThing wetland area An vegetated area which overlaps a wetland ecosystem. SLSO_relaxed.owl ENVO:01001305 biolink:NamedThing vegetated area A vegetated area is a geographic feature which has ground cover dominated by plant communities. SLSO_relaxed.owl ENVO:00000106 biolink:NamedThing grassland area An area in which grasses (Graminae) are a significant component of the vegetation. SLSO_relaxed.owl ENVO:00000109 biolink:NamedThing woodland area Land having a cover of trees, shrubs, or both. SLSO_relaxed.owl ENVO:00000300 biolink:NamedThing scrubland area Area covered with low-growing or stunted perennial vegetation and usually not mixed with trees. SLSO_relaxed.owl ENVO:01000887 biolink:NamedThing area of sedge- and forb-dominated herbaceous vegetation An area of a planet's surface which is primarily covered by sedges or forbs, possibly interpersed with grasses or grass-like plants. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction. SLSO_relaxed.owl ENVO:01001293 biolink:NamedThing bush area A vegetated area which has not been cleared or is sparsely settled, usually scrub-covered or forested SLSO_relaxed.owl ENVO:00000063 biolink:NamedThing water body An accumulation of water of varying size. SLSO_relaxed.owl ENVO:01000685 biolink:NamedThing water mass A mass of water. SLSO_relaxed.owl ENVO:00005803 biolink:NamedThing animal habitation The dwelling of an animal or group of similar animals. SLSO_relaxed.owl ENVO:00000077 biolink:NamedThing agricultural ecosystem SLSO_relaxed.owl ENVO:01001828 biolink:NamedThing anthropised ecosystem An ecosystem which is formed as a result of human activity or impact. SLSO_relaxed.owl ENVO:01000219 biolink:NamedThing anthropogenic terrestrial biome An anthropogenic terrestrial biome is a terrestrial biome which has community structures determined by human activity. SLSO_relaxed.owl ENVO:01001244 biolink:NamedThing cropland ecosystem An ecosystem which 1) is determined by communities of annual crops, perennial woody crops, or by actively tilled land, 2) is primarily used for agricultural activity, and 3) contains no village or larger human settlement. SLSO_relaxed.owl ENVO:00000097 biolink:NamedThing desert area A region rendered barren or partially barren by environmental extremes, especially by low rainfall. SLSO_relaxed.owl ENVO:01000752 biolink:NamedThing area of barren land An area of a planet's surface which is primarily composed of bedrock, desert pavement, scarp rock, talus, material exposed by slides, volcanic material, glacial debris, sand, material exposed during strip mining, gravel, and other accumulations of earthen material in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction. SLSO_relaxed.owl ENVO:00000100 biolink:NamedThing valley A depression which has been formed as a result of erosion by water or ice and which is low-lying, bordered by higher ground, and especially elongate. SLSO_relaxed.owl ENVO:03000015 biolink:NamedThing geographic basin A depression which is part of a planetary crust, is of geographic scale, and is partially or completely enclosed. SLSO_relaxed.owl ENVO:00000111 biolink:NamedThing forested area An area with a high density of trees. A small forest may be called a wood. SLSO_relaxed.owl ENVO:00000114 biolink:NamedThing agricultural field A field which is located on land and used for agricultural purposes, such as the grazing of livestock or the cultivation of crops. SLSO_relaxed.owl ENVO:00000299 biolink:NamedThing ice field A field of ice, formed in regions of perennial frost. SLSO_relaxed.owl ENVO:00000128 biolink:NamedThing dry valley A valley which no longer has water flowing or accumulating over its surface. SLSO_relaxed.owl ENVO:00000248 biolink:NamedThing glacial valley A valley that contains, or contained, a glacier and was formed by glacial activity. Typically U-shaped in cross-section. SLSO_relaxed.owl ENVO:00000134 biolink:NamedThing permafrost An environmental material which is 1) composed primarily of soil or rock and included ice or organic material and 2) at or below the freezing point of water for two or more years. SLSO_relaxed.owl ENVO:00002264 biolink:NamedThing waste material A material which is not the desired output of a process and which is typically the input of a process which removes it from its producer (e.g. a disposal process). SLSO_relaxed.owl ENVO:00010505 biolink:NamedThing aerosol Airborne solid particles (also called dust or particulate matter (PM)) or liquid droplets. SLSO_relaxed.owl ENVO:01000060 biolink:NamedThing particulate environmental material An environmental material which is composed primarily of particles. SLSO_relaxed.owl ENVO:01000155 biolink:NamedThing organic material Environmental material derived from living organisms and composed primarily of one or more biomacromolecules. SLSO_relaxed.owl ENVO:01000256 biolink:NamedThing mineral material A mineral material is an environmental material which is primarily composed of some substance that is naturally occurring, solid and stable at room temperature, representable by a chemical formula, usually abiogenic, and that has an ordered atomic structure. SLSO_relaxed.owl ENVO:01000406 biolink:NamedThing snow Snow is an environmental material which is primarily composed of flakes of crystalline water ice. SLSO_relaxed.owl ENVO:01000637 biolink:NamedThing outer space Outer space is a hard vacuum containing a low density of particles, predominantly a plasma of hydrogen and helium as well as electromagnetic radiation, magnetic fields, neutrinos, dust and cosmic rays that exists between celestial bodies. SLSO_relaxed.owl ENVO:01000797 biolink:NamedThing gaseous environmental material A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely. SLSO_relaxed.owl ENVO:01000814 biolink:NamedThing solid environmental material An environmental material which is in a solid state. SLSO_relaxed.owl ENVO:01000815 biolink:NamedThing liquid environmental material An environmental material which is in a liquid state. SLSO_relaxed.owl ENVO:01001069 biolink:NamedThing metallic material A material which is composed primarily of one or more pure metals and which shows their properties. SLSO_relaxed.owl ENVO:01001154 biolink:NamedThing volatile astrogeological material A material which is composed primarily of chemical elements and compounds with relatively low boiling points, equilibrium condensation temperatures below 1300 Kelvin, and which are part of the crust or atmosphere of a moon or planet. SLSO_relaxed.owl ENVO:02000140 biolink:NamedThing fluid environmental material An environmental material which is unable to resist shear forces and continuously deforms when subject to them. SLSO_relaxed.owl ENVO:03510037 biolink:NamedThing radioactive material Any material containing unstable atoms that emit ionizing radiation as it decays. SLSO_relaxed.owl ENVO:00000147 biolink:NamedThing ocean current The region occupied by any more or less continuous, directed movement of ocean water that flows in one of the Earth's oceans. Ocean Currents are rivers of hot or cold water within the ocean. The currents are generated from the forces acting upon the water like the earth's rotation, the wind, the temperature and salinity differences and the gravitation of the moon. The depth contours, the shoreline and other movements influence the direction and strength of the movements of water that forms a given current. SLSO_relaxed.owl ENVO:01000067 biolink:NamedThing marine current A water current which is maintained by a continuous, directed movement of marine water, generated by forces caused by breaking waves, wind, Coriolis force, temperature and salinity differences, and tides caused by the gravitational pull of astronomical bodies. Depth contours, shoreline configurations and interaction with other currents influence a current's direction and strength. SLSO_relaxed.owl ENVO:00000176 biolink:NamedThing elevated landform A landform elevated above the surrounding area. SLSO_relaxed.owl ENVO:01001886 biolink:NamedThing landform A solid astronomical body part which has been formed from and is composed primarily of the matter of that astronomical body. SLSO_relaxed.owl ENVO:00000309 biolink:NamedThing depressed landform A landform sunken or depressed below the surrounding area. SLSO_relaxed.owl ENVO:00002000 biolink:NamedThing slope A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land. SLSO_relaxed.owl ENVO:01001884 biolink:NamedThing surface landform A landform which occurs on the surface of an astronomical body. SLSO_relaxed.owl ENVO:01000687 biolink:NamedThing coast A coast is the area where land meets the sea, ocean, or lake. SLSO_relaxed.owl ENVO:01001477 biolink:NamedThing liquid astronomical body part A part of an astronomical body which is primarily composed of liquid material. SLSO_relaxed.owl ENVO:01001478 biolink:NamedThing gaseous astronomical body part A part of an astronomical body which is primarily composed of gaseous material. SLSO_relaxed.owl ENVO:00000233 biolink:NamedThing swamp ecosystem A wetland ecosystem in which land mass is permanently inundated by shallow bodies of water, generally with a substantial number of hummocks, or dry-land protrusions. SLSO_relaxed.owl ENVO:01001209 biolink:NamedThing wetland ecosystem A terrestrial ecosystem which is inundated or saturated by surface or ground water at a frequency and duration sufficient to support, and that under normal circumstances does support, a prevalence of vegetation typically adapted for life in saturated soil conditions. SLSO_relaxed.owl ENVO:02000110 biolink:NamedThing open-pit mine A surface mine that utilizes a technique of extracting rock or minerals from the earth by their removal from an open pit or borrow. SLSO_relaxed.owl ENVO:03000110 biolink:NamedThing cryoform A solid astronomical body part which is primarily composed of a continuous mass of snow and/or ice. SLSO_relaxed.owl ENVO:01000293 biolink:NamedThing ice mass A mass of water ice. SLSO_relaxed.owl ENVO:01001276 biolink:NamedThing water ice layer A solid layer which is primarily composed of some water-based ice. SLSO_relaxed.owl ENVO:00000339 biolink:NamedThing piece of rock A mass of solid material which is composed primarily of rock. SLSO_relaxed.owl ENVO:01001687 biolink:NamedThing mass of solid material An mass of environmental material which is composed primarily of a solid environmental material SLSO_relaxed.owl ENVO:01003002 biolink:NamedThing particle A mass of solid material which is either 1) a minute fragment of a larger mass or 2) one of a collection of small masses composing an aggregate. SLSO_relaxed.owl ENVO:00000340 biolink:NamedThing particle of sand A particle which 1) is composed primarily of and derived from rock or mineral sources and 2) is or was part of a portion of sand. SLSO_relaxed.owl ENVO:00000343 biolink:NamedThing particle of silt A particle which 1) is primarily composed of quartz or feldspar and 2) is or was part of a portion of silt. SLSO_relaxed.owl ENVO:01003003 biolink:NamedThing particle of clay A particle which 1) is composed primarily of hydrous aluminium phyllosilicate minerals, in turn composed of aluminium and silicon ions bonded into tiny, thin plates by interconnecting oxygen and hydroxide ions, and 2) is or was part of a portion of clay. SLSO_relaxed.owl ENVO:00000344 biolink:NamedThing grain of desert sand SLSO_relaxed.owl ENVO:00000501 biolink:NamedThing submerged bed The portion of the ground surface which lies below water. SLSO_relaxed.owl ENVO:01000500 biolink:NamedThing brick exterior wall A brick exterior wall is an exterior wall that is built from bricks. SLSO_relaxed.owl ENVO:01000646 biolink:NamedThing lithosphere A lithosphere is the outermost shell of a terrestrial-type planet or natural satellite that is defined by its rigid mechanical properties. SLSO_relaxed.owl ENVO:01000667 biolink:NamedThing geological fracture A geological fracture is any separation in a geologic formation, such as a joint or a fault that divides a mass of rock into two or more pieces. SLSO_relaxed.owl ENVO:01001097 biolink:NamedThing tectonic plate A part of a lithosphere which is separated by other such parts by geographic faults or similar geomorphological discontinuities. SLSO_relaxed.owl ENVO:01001781 biolink:NamedThing part of a landmass A solid astronomical body part which is part of the landmass of that body. SLSO_relaxed.owl ENVO:01001785 biolink:NamedThing land A surface layer of an astronomical body which is primarily composed of solid material and is not covered by oceans or other bodies of water. SLSO_relaxed.owl ENVO:04000010 biolink:NamedThing soil surface layer A surface layer which is composed primarily of soil. SLSO_relaxed.owl ENVO:01001110 biolink:NamedThing ecosystem An environmental system which includes both living and non-living components. SLSO_relaxed.owl ENVO:01001055 biolink:NamedThing environment associated with an animal part or small animal An environmental system determined by part of a living or dead animal, or a whole small animal. SLSO_relaxed.owl ENVO:01001057 biolink:NamedThing environment associated with a plant part or small plant An environmental system determined by part of a living or dead plant, or a whole small plant. SLSO_relaxed.owl ENVO:01001167 biolink:NamedThing ecosystem fragment An ecosystem which has been causally isolated from a larger ecosystem within which it was previously embedded, such that the direct exchange of materials, resources, and energy between these systems is severely or entirely curtailed. SLSO_relaxed.owl ENVO:00000446 biolink:NamedThing terrestrial biome A biome which is primarily or completely situated on a landmass. SLSO_relaxed.owl ENVO:00002030 biolink:NamedThing aquatic biome A biome which is determined by a water body and which has ecological climax communities adapted to life in or on water. SLSO_relaxed.owl ENVO:01000179 biolink:NamedThing desert biome A desert ecosystem which is undergoing climactic ecological succession. SLSO_relaxed.owl ENVO:01000246 biolink:NamedThing village biome A village biome is an anthropogenic terrestrial biome which contains settlements such as villages, towns, and/or small cities and which is primarily used for agricultural activity. SLSO_relaxed.owl ENVO:01000248 biolink:NamedThing dense settlement biome A dense settlement biome is an anthropogenic terrestrial biome which is primarily used for human habitation, recreation, and industry within built structures with little other land use. SLSO_relaxed.owl ENVO:01000339 biolink:NamedThing polar biome A biome which is subject to polar climatic conditions. SLSO_relaxed.owl ENVO:01001830 biolink:NamedThing tropical biome A biome which is subject to tropical climatic conditions. SLSO_relaxed.owl ENVO:01001831 biolink:NamedThing temperate biome A biome which is subject to temperate climatic conditions. SLSO_relaxed.owl ENVO:01001832 biolink:NamedThing subtropical biome A biome which is subject to subtropical climatic conditions. SLSO_relaxed.owl ENVO:01001834 biolink:NamedThing subpolar biome A biome which is subject to subpolar climatic conditions. SLSO_relaxed.owl ENVO:01001835 biolink:NamedThing alpine biome A biome which is subject to alpine altitudinal conditions. SLSO_relaxed.owl ENVO:01001836 biolink:NamedThing montane biome A biome which is subject to montane altitudinal conditions. SLSO_relaxed.owl ENVO:01001838 biolink:NamedThing arid biome A biome which is subject to arid environmental conditions. SLSO_relaxed.owl ENVO:01001206 biolink:NamedThing grassland ecosystem An ecosystem in which grasses (Graminae) are the dominant form of vegetation and determine the system's structure and dynamics. SLSO_relaxed.owl ENVO:01001243 biolink:NamedThing forest ecosystem An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities form continuous or discontinuous regions of canopy cover. SLSO_relaxed.owl ENVO:01001245 biolink:NamedThing woodland ecosystem An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities are spaced sufficiently far apart to allow sunlight to illuminate the understory. SLSO_relaxed.owl ENVO:00000447 biolink:NamedThing marine biome An aquatic biome which is determined by a marine water body. SLSO_relaxed.owl ENVO:01001788 biolink:NamedThing marine ecosystem SLSO_relaxed.owl ENVO:01001311 biolink:NamedThing solid surface layer A surface layer which is composed primarily of solid environmental material. SLSO_relaxed.owl ENVO:01000324 biolink:NamedThing planetary surface A planetary surface is a surface layer where the solid or liquid material of a planet comes into contact with an atmosphere or outer space. SLSO_relaxed.owl ENVO:01001554 biolink:NamedThing surface layer of a water body A water surface that is part of a water body. SLSO_relaxed.owl ENVO:00001995 biolink:NamedThing rock A rock is a naturally occurring solid aggregate of one or more minerals or mineraloids. SLSO_relaxed.owl ENVO:00002008 biolink:NamedThing dust Particulate environmental material with diameters less than 500 micrometers. SLSO_relaxed.owl ENVO:00002040 biolink:NamedThing wood SLSO_relaxed.owl ENVO:01000845 biolink:NamedThing crystal A solid material whose constituents, such as atoms, molecules or ions, are arranged in a highly ordered microscopic structure, forming a crystal lattice that extends in all directions. SLSO_relaxed.owl ENVO:01001121 biolink:NamedThing plant matter Organic material which is primarily composed of plant structures, living or dead. SLSO_relaxed.owl ENVO:01001125 biolink:NamedThing ice An ice is an environmental material which is either frozen or which is maintained in a solid state by gravitational forces or pressure. SLSO_relaxed.owl ENVO:01001646 biolink:NamedThing amorphous solid A solid material which does not have a regularly organised internal structure. SLSO_relaxed.owl ENVO:00002005 biolink:NamedThing air The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth. SLSO_relaxed.owl ENVO:01000266 biolink:NamedThing water vapour Water vapour is a vapour which is the gas phase of water. SLSO_relaxed.owl ENVO:00002006 biolink:NamedThing liquid water An environmental material primarily composed of dihydrogen oxide in its liquid form. SLSO_relaxed.owl ENVO:00002007 biolink:NamedThing sediment Particulate environmental material which is formed as a result of the transport and deposition of particles by flowing liquid. SLSO_relaxed.owl ENVO:00002982 biolink:NamedThing clay Particulate environmental material which 1) is composed primarily of clay particles, with only minor proportions of other materials, 2) demonstrates plasticity when wet, and 3) is capable of hardening when dried or fired. SLSO_relaxed.owl ENVO:01000016 biolink:NamedThing silt Particulate environmental material which is primarily composed of silt particles. SLSO_relaxed.owl ENVO:01000017 biolink:NamedThing sand Particulate environmental material which is composed primarily of particles of sand with only minor proportions of other substances. SLSO_relaxed.owl ENVO:03000021 biolink:NamedThing soot Particulate environmental material which is composed primarily of carbon particles formed through the incomplete combustion of hydrocarbons. SLSO_relaxed.owl ENVO:00002010 biolink:NamedThing saline water Water which contains a significant concentration of dissolved salts. SLSO_relaxed.owl ENVO:00002186 biolink:NamedThing contaminated water SLSO_relaxed.owl ENVO:01000358 biolink:NamedThing acidic water A portion of acidic water is a portion of water with a pH less than 7. SLSO_relaxed.owl ENVO:00002016 biolink:NamedThing sedimentary rock A rock formed by deposition of either clastic sediments, organic matter, or chemical precipitates (evaporites), followed by compaction of the particulate matter and cementation during diagenesis. SLSO_relaxed.owl ENVO:02000094 biolink:NamedThing ore a type of rock that contains sufficient minerals with important elements including metals that can be economically extracted from the rock. SLSO_relaxed.owl ENVO:01000063 biolink:NamedThing planktonic material A portion of planktonic material is a portion of environmental material primarily composed of plankton. SLSO_relaxed.owl ENVO:01000349 biolink:NamedThing root matter An organic material primarily composed of a portion of plant root. SLSO_relaxed.owl ENVO:01001189 biolink:NamedThing algal material SLSO_relaxed.owl ENVO:01001391 biolink:NamedThing gill tissue material SLSO_relaxed.owl ENVO:00002114 biolink:NamedThing chemically enriched sediment Sediment which has increased levels of one or more chemical compounds. SLSO_relaxed.owl ENVO:03000033 biolink:NamedThing marine sediment Sediment which has been transported through the marine water column, settling on the seafloor. SLSO_relaxed.owl ENVO:03600001 biolink:NamedThing chemically contaminated sediment Sediment which contains some chemical contaminant. SLSO_relaxed.owl ENVO:00002116 biolink:NamedThing contaminated soil A portion of contaminated soil is a portion of soil with elevated levels of some contaminant. SLSO_relaxed.owl ENVO:00003082 biolink:NamedThing enriched soil A portion of enriched soil is a portion of soil with elevated levels of some material entity. SLSO_relaxed.owl ENVO:00002149 biolink:NamedThing sea water Water which has physicochemical properties that have been determined by the processes occuring in a sea or ocean. SLSO_relaxed.owl ENVO:00002167 biolink:NamedThing platinum mine SLSO_relaxed.owl ENVO:00002168 biolink:NamedThing gold mine SLSO_relaxed.owl ENVO:00002169 biolink:NamedThing coal mine SLSO_relaxed.owl ENVO:02000092 biolink:NamedThing iron mine SLSO_relaxed.owl ENVO:02000093 biolink:NamedThing uranium mine SLSO_relaxed.owl ENVO:00002173 biolink:NamedThing hospital A hospital is a building in which health care services are provided by specialized staff and equipment. SLSO_relaxed.owl ENVO:00002202 biolink:NamedThing organically enriched sediment Chemically-enriched sediment which has increased levels of organic compounds. SLSO_relaxed.owl ENVO:00002203 biolink:NamedThing inorganically enriched sediment Chemically-enriched sediment which has increased levels of inorganic compounds. SLSO_relaxed.owl ENVO:00002267 biolink:NamedThing industrial waste material Industrial wastes are liquid, solid and gaseous wastes originating from the manufacture of specific products. SLSO_relaxed.owl ENVO:00002214 biolink:NamedThing power plant A power plant is a building which contains one or more generators which convert mechanical energy into electrical energy through the relative motion between a magnetic field and a conductor. The energy source harnessed to turn the generator varies widely. SLSO_relaxed.owl ENVO:00003861 biolink:NamedThing industrial building An industrial building is a building within which goods are produced and, optionally, stored or within which services are rendered. SLSO_relaxed.owl ENVO:00003885 biolink:NamedThing brewery A brewery is a building in which alcoholic beverages are produced by brewing, that is, steeping a starch source (commonly cereal grains) in water and fermenting the resulting sweet liquid with yeast. At times, the products are also sold from the brewery. SLSO_relaxed.owl ENVO:01000536 biolink:NamedThing factory A factory (previously manufactory) or manufacturing plant is an industrial site, usually consisting of buildings and machinery, or more commonly a complex having several buildings, where workers manufacture goods or operate machines processing one product into another. SLSO_relaxed.owl ENVO:00002215 biolink:NamedThing geothermal power plant A geothermal power plant is a power plant which uses heat generated by the decay of radioactive isotopes in the Earth's mantle and crust as well as primordial heat left over from the formation of the Earth to drive its generators. SLSO_relaxed.owl ENVO:00002271 biolink:NamedThing nuclear power plant A nuclear power plant is a power plant which uses heat generated by a radioactive decay in a nuclear reactor to convert water into steam in order to drive turbines in electrical generators through pressure. SLSO_relaxed.owl ENVO:2000037 biolink:NamedThing fossil fuel power plant A power station which burns a fossil fuel such as coal, natural gas, or petroleum to produce electricity. SLSO_relaxed.owl ENVO:2000038 biolink:NamedThing coal power plant SLSO_relaxed.owl ENVO:2000041 biolink:NamedThing solar power station SLSO_relaxed.owl ENVO:2000042 biolink:NamedThing ocean thermal power station SLSO_relaxed.owl ENVO:2000043 biolink:NamedThing tidal power plant SLSO_relaxed.owl ENVO:00002261 biolink:NamedThing forest soil A portion of soil which is found in a forested area. SLSO_relaxed.owl ENVO:00005748 biolink:NamedThing dry soil Soil which has little to no water content and in which minerals and other soluble chemical entities have either bonded or become adsorbed to sold particles due to insufficient water availability. SLSO_relaxed.owl ENVO:00005749 biolink:NamedThing farm soil A portion of soil which is part of a cropland or a rangeland biome. SLSO_relaxed.owl ENVO:00005750 biolink:NamedThing grassland soil A portion of soil which is found in a grassland. SLSO_relaxed.owl ENVO:00005755 biolink:NamedThing field soil Soil which is part of an agricultural field. SLSO_relaxed.owl ENVO:00005786 biolink:NamedThing upland soil Soil which is part of some elevated land. SLSO_relaxed.owl ENVO:01001185 biolink:NamedThing acidic soil Soil which has increased levels of molecules or ions capable of donating a hydron (proton or hydrogen ion) to other chemical entities, or, alternatively, capable of forming covalent bonds with other chemicals via the acceptance of an electron pair, resulting in a bulk pH measurement of less than 7. SLSO_relaxed.owl ENVO:01001526 biolink:NamedThing frozen soil Soil which is below the freezing point of water. SLSO_relaxed.owl ENVO:06105205 biolink:NamedThing compacted soil A soil which has a high bulk density and/or a low porosity. A compacted soil has a reduced rate of both water infiltration and drainage SLSO_relaxed.owl ENVO:00002874 biolink:NamedThing air conditioning unit A manufactuered product which is capable of removing heat and controlling the humidity of the air within a site. SLSO_relaxed.owl ENVO:00003968 biolink:NamedThing air filter An air filter is a device that removes some substance from air. SLSO_relaxed.owl ENVO:01000457 biolink:NamedThing masonry unit A masonry unit is a solid piece of material, usually with a regular shape, used as a component in the construction of buildings. Masonry units are usually composed of brick, stone, marble, granite, travertine, limestone, cast stone, concrete block, glass block, stucco, tile, or cob. SLSO_relaxed.owl ENVO:01000507 biolink:NamedThing iron sheet An iron sheet is a mass of iron which has been forged into a roughly planar form of less than 6 millimetres in thickness. SLSO_relaxed.owl ENVO:01000514 biolink:NamedThing tile A tile is a manufactured piece of hard-wearing material such as ceramic, stone, metal, or even glass, generally used for covering roofs, floors, walls, showers, or other objects such as tabletops. Alternatively, tile can sometimes refer to similar units made from lightweight materials such as perlite, wood, and mineral wool, typically used for wall and ceiling applications. SLSO_relaxed.owl ENVO:01000604 biolink:NamedThing vehicle A vehicle is a mobile machine which transports people or cargo. SLSO_relaxed.owl ENVO:01000610 biolink:NamedThing motor A motor is a machine designed to convert one or more forms of energy into mechanical energy. SLSO_relaxed.owl ENVO:01000975 biolink:NamedThing animal trap A manufactured product which is designed to catch and hold animals. SLSO_relaxed.owl ENVO:01000989 biolink:NamedThing plumbing fixture An exchangeable device which can be connected to a plumbing system to deliver and drain water. SLSO_relaxed.owl ENVO:00003040 biolink:NamedThing animal house A house used for sheltering non-human animals. SLSO_relaxed.owl ENVO:01000417 biolink:NamedThing house A house is a building that provides a dwelling-place for a living entity. SLSO_relaxed.owl ENVO:01000418 biolink:NamedThing human house SLSO_relaxed.owl ENVO:01000781 biolink:NamedThing public building A building which is publically accessible. SLSO_relaxed.owl ENVO:01001222 biolink:NamedThing commercial building A building which is primarily used to facilitate the buying or selling of goods or services. SLSO_relaxed.owl ENVO:01001480 biolink:NamedThing domestic building A building which is primarily used for the long-term habitation of humans. SLSO_relaxed.owl ENVO:00003919 biolink:NamedThing research station A building or collection of co-located buildings constructed for the purpose of undertaking scientific research. SLSO_relaxed.owl ENVO:01001406 biolink:NamedThing laboratory facility A research facility in which systems of manufactured products control internal conditions and in which scientific or technological research, experiments, and measurement may be performed. SLSO_relaxed.owl ENVO:00003963 biolink:NamedThing warehouse A warehouse is a building which is used for the storage of goods. SLSO_relaxed.owl ENVO:01001221 biolink:NamedThing office building A commercial building which contains parts used as workplaces primarily for administrative and managerial workers. SLSO_relaxed.owl ENVO:00005805 biolink:NamedThing nest of bird A bird nest is the spot in which a bird lays and incubates its eggs and raises its young. SLSO_relaxed.owl ENVO:00010504 biolink:NamedThing surface layer A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings. SLSO_relaxed.owl ENVO:01001684 biolink:NamedThing interface layer A layer which separates two portions of environmental material which possess 1) differing compositions, 2) a discontinuity of some property, or 3) some derivative of some property in a direction normal to the interface. SLSO_relaxed.owl ENVO:01001677 biolink:NamedThing fluid interface layer A surface layer which separates two portions of fluid with respect to either 1) a discontinuity of some fluid property or 2) some derivative of one of these properties in a direction normal to the interface. SLSO_relaxed.owl ENVO:01000005 biolink:NamedThing upwelling MERGED DEFINITION: TARGET DEFINITION: An oceanographic feature that involves wind-driven motion of dense, cooler, and usually nutrient-rich water towards the ocean surface, replacing the warmer, usually nutrient-deplete surface water. -------------------- SOURCE DEFINITION: A marine upwelling is a net flow of marine water to the surface of the water column from deeper regions. This is often a result of surface water displacement off continental coasts by wind action. Localised upwellings may also occur along divergent fronts around eddies and along some of the major oceanographic features. Deeper waters often have higher nutrient content; consequently blooms of primary producers, such as planktonic algae, are generally observed around upwelling zones. SLSO_relaxed.owl ENVO:01000020 biolink:NamedThing estuarine biome Expressions of the estuarine biome occur at wide lower courses of a rivers where they flow into a sea. Estuaries experience tidal flows and their water is a changing mixture of fresh and salt. SLSO_relaxed.owl ENVO:01000022 biolink:NamedThing marine salt marsh biome The marine salt marsh biome comprises marshes that are transitional intertidals between land and salty or brackish marine water (e.g.: sloughs, bays, estuaries). It is dominated by halophytic (salt tolerant) herbaceous plants. The daily tidal surges bring in nutrients, which tend to settle in roots of the plants within the salt marsh. The natural chemical activity of salty (or brackish) water and the tendency of algae to bloom in the shallow unshaded water also allow for great biodiversity. SLSO_relaxed.owl ENVO:01000046 biolink:NamedThing marginal sea biome The marginal sea biome comprises parts of an ocean partially enclosed by land such as islands, archipelagos, or peninsulas. Unlike mediterranean seas, marginal seas have ocean currents caused by ocean winds. Many marginal seas are enclosed by island arcs that were formed from the subduction of one oceanic plate beneath another. SLSO_relaxed.owl ENVO:01000048 biolink:NamedThing ocean biome A marine biome which is determined by an ocean. SLSO_relaxed.owl ENVO:01000858 biolink:NamedThing marine upwelling biome A marine biome which contains communities adapted to living in an environment determined by an upwelling process. SLSO_relaxed.owl ENVO:01001607 biolink:NamedThing water current A hydroform which is maintained by a continuous, directed movement of water, generated by disequilibria in a water mass. SLSO_relaxed.owl ENVO:01000174 biolink:NamedThing forest biome A forest ecosystem which is undergoing climactic ecological succession. SLSO_relaxed.owl ENVO:01000175 biolink:NamedThing woodland biome A woodland biome is a terrestrial biome which includes, across its entire spatial extent, woody plants spaced sufficiently far apart to allow light penetration to support communities of herbaceous plants or shrubs living closer to the woodland floor. SLSO_relaxed.owl ENVO:01000176 biolink:NamedThing shrubland biome A shrubland biome is a terrestrial biome which includes, across its entire spatial extent, dense groups of shrubs. SLSO_relaxed.owl ENVO:01000177 biolink:NamedThing grassland biome A grassland ecosystem in which dominant ecological communities have reached their climax successional state. SLSO_relaxed.owl ENVO:01000430 biolink:NamedThing broadleaf forest A forest biome which contains densely packed populations or communities of broadleaf trees, strongly limiting light penetration to the forest floor. SLSO_relaxed.owl ENVO:01000431 biolink:NamedThing mixed forest A forest ecosystem which contains densely packed populations or communities of broadleaf and coniferous trees, strongly limiting light penetration to the forest floor. SLSO_relaxed.owl ENVO:01000432 biolink:NamedThing swamp forest SLSO_relaxed.owl ENVO:01000433 biolink:NamedThing needleleaf forest SLSO_relaxed.owl ENVO:01000434 biolink:NamedThing sclerophyllous forest SLSO_relaxed.owl ENVO:01000435 biolink:NamedThing montane forest SLSO_relaxed.owl ENVO:01001803 biolink:NamedThing tropical forest A forest ecosystem which is subject to tropical climate conditions. SLSO_relaxed.owl ENVO:01001804 biolink:NamedThing subtropical forest A forest ecosystem which is subject to subtropical climate conditions. SLSO_relaxed.owl ENVO:01001805 biolink:NamedThing temperate forest A forest ecosystem which is subject to temperate climate conditions. SLSO_relaxed.owl ENVO:01001806 biolink:NamedThing tropical grassland A grassland ecosystem which is subject to tropical climatic conditions. SLSO_relaxed.owl ENVO:01001809 biolink:NamedThing subtropical grassland A grassland which is subject to subtropical climatic conditions. SLSO_relaxed.owl ENVO:01001811 biolink:NamedThing temperate grassland SLSO_relaxed.owl ENVO:01000178 biolink:NamedThing savanna biome A woodland biome which has seasonal water availability and includes trees spaced sufficiently far apart to allow an unbroken layer of grass, sedge (Cyperaceae) or rush (Juncaceae) communities to live. SLSO_relaxed.owl ENVO:01000221 biolink:NamedThing temperate woodland biome A woodland biome which is subject to temperate climate patterns. SLSO_relaxed.owl ENVO:01000184 biolink:NamedThing subtropical desert biome A subtropical desert biome is a desert biome which has communities adapted to temperatures above a monthly average of 18 degrees Celsius, high daily temperature ranges of approximately 20 degrees Celsius, high insolation (but lower than that of a tropical desert biome), inhibited cloud formation, and very low precipitation. Subtropical desert biomes located near coasts with cold upwellings may have cooler temperatures and reduced insolution due to fog. SLSO_relaxed.owl ENVO:01000191 biolink:NamedThing subtropical grassland biome A subtropical grassland in which dominant ecological communities have reached their climax successional state. SLSO_relaxed.owl ENVO:01000189 biolink:NamedThing temperate savanna biome A savanna biome which is subject to temperate climate patterns. SLSO_relaxed.owl ENVO:01000193 biolink:NamedThing temperate grassland biome SLSO_relaxed.owl ENVO:01000202 biolink:NamedThing temperate broadleaf forest biome A broadleaf forest which is subject to temperate climate patterns. SLSO_relaxed.owl ENVO:01000211 biolink:NamedThing temperate coniferous forest biome A coniferous forest biome which is subject to temperate climate patterns. SLSO_relaxed.owl ENVO:01000212 biolink:NamedThing temperate mixed forest biome A temperate mixed forest in which dominant ecological communities have reached their climax successional state. SLSO_relaxed.owl ENVO:01000215 biolink:NamedThing temperate shrubland biome A shrubland biome which is subject to temperate climate patterns. SLSO_relaxed.owl ENVO:01000856 biolink:NamedThing temperate marginal sea biome A marginal sea biome which is located in a region with a temperate climate. SLSO_relaxed.owl ENVO:01000860 biolink:NamedThing temperate marine upwelling biome A marine upwelling biome which is located in a region subject to temperate climate patterns. SLSO_relaxed.owl ENVO:01000192 biolink:NamedThing tropical grassland biome SLSO_relaxed.owl ENVO:01000200 biolink:NamedThing tropical broadleaf forest biome A tropical broadleaf forest in which dominant ecological communities have reached their climax successional state. SLSO_relaxed.owl ENVO:01001798 biolink:NamedThing tropical mixed forest biome A tropical mixed forest in which dominant ecological communities have reached their climax successional state. SLSO_relaxed.owl ENVO:01000196 biolink:NamedThing coniferous forest biome A coniferous forest biome is a forest biome which contains densely packed populations or communities of coniferous trees, strongly limiting light penetration to the forest floor. SLSO_relaxed.owl ENVO:01000197 biolink:NamedThing broadleaf forest biome A broadleaf forest ecosystem which is undergoing climactic ecological succession. SLSO_relaxed.owl ENVO:01000198 biolink:NamedThing mixed forest biome A mixed forest in which dominant ecological communities have reached their climax successional state. SLSO_relaxed.owl ENVO:01000383 biolink:NamedThing temperate evergreen needleleaf forest An evergreen needleleaf forest which is subject to temperate climate patterns. SLSO_relaxed.owl ENVO:01000386 biolink:NamedThing temperate deciduous needleleaf forest A deciduous needleleaf forest which is subject to temperate climate patterns. SLSO_relaxed.owl ENVO:01001792 biolink:NamedThing tropical broadleaf forest A broadleaf forest which is subject to tropical climate conditions. SLSO_relaxed.owl ENVO:01001794 biolink:NamedThing temperate broadleaf forest A broadleaf forest which is subject to temperate climate conditions. SLSO_relaxed.owl ENVO:01001796 biolink:NamedThing temperate mixed forest A mixed forest which is subject to temperate climatic conditions. SLSO_relaxed.owl ENVO:01001797 biolink:NamedThing tropical mixed forest A mixed forest which is subject to tropical climatic conditions. SLSO_relaxed.owl ENVO:01000385 biolink:NamedThing temperate deciduous broadleaf forest A deciduous broadleaf forest which is subject to temperate climate patterns. SLSO_relaxed.owl ENVO:01000397 biolink:NamedThing temperate broadleaf evergreen forest A broadleaf evergreen forest which is subject to temperate climate patterns. SLSO_relaxed.owl ENVO:01000203 biolink:NamedThing environmental condition An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system. SLSO_relaxed.owl PATO:0001018 biolink:NamedThing physical quality A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. SLSO_relaxed.owl PATO:0000125 biolink:NamedThing mass A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. SLSO_relaxed.owl PATO:0000140 biolink:NamedThing position A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. SLSO_relaxed.owl PATO:0000146 biolink:NamedThing temperature A physical quality of the thermal energy of a system. SLSO_relaxed.owl PATO:0000165 biolink:NamedThing time A quality in which events occur in sequence. SLSO_relaxed.owl PATO:0001739 biolink:NamedThing radiation quality SLSO_relaxed.owl PATO:0001822 biolink:NamedThing wetness A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid. SLSO_relaxed.owl PATO:0002198 biolink:NamedThing quality of a substance A quality inhering in a bearer by virtue of its constitution. SLSO_relaxed.owl PATO:0015021 biolink:NamedThing combustibility The propensity of a material to undergo combustion. Combustion encompasses smouldering and flaming combustion. Combustibility is usually applied to solids. SLSO_relaxed.owl OBO:RBO_010017 biolink:NamedThing radiation quality Is a quality of radiation that reflects the fluence spectrum of charged and neutral particles within the material or medium where dose is being deposited. SLSO_relaxed.owl OBO:RBO_010020 biolink:NamedThing tissue equivalence Denotes a substance with absorbing and scattering properties for a given radiation that sufficiently match those of a particular biological tissue. SLSO_relaxed.owl ENVO:01000204 biolink:NamedThing tropical A tropical condition is an environmental condition in which an environmental system receives high yearly solar irradiance per unit area and, on Earth, the Sun reaches a subsolar point at least once during the solar year. This results in a hot and moist year-round climate at low elevations, which have a monthly average temperature above 18 degrees Celsius. SLSO_relaxed.owl ENVO:01000205 biolink:NamedThing subtropical A subtropical condition is an environmental condition in which an envrionmental system receives more solar irradiance than those with temperate conditions, but less than those with tropical conditions. At low elevations, this typically results in eight months of the year having average temperatures greater than or equal to 10 degrees Celsius with the coldest monthly temperature averaging between 2 and 13 degrees Celsius. SLSO_relaxed.owl ENVO:01000206 biolink:NamedThing temperate A temperate condition is an environmental condition in which an environmental system receives less solar irradiance than those with subpolar conditions, but greater than those with subtropical conditions. SLSO_relaxed.owl ENVO:01000230 biolink:NamedThing arid An environmental condition in which annual precipitation is less than half of annual potential evapotranspiration. SLSO_relaxed.owl ENVO:01000238 biolink:NamedThing polar A polar condition is an environmental condition in which an environmental system receives low, yearly solar irradiance per unit area, resulting in colder climatic conditions. SLSO_relaxed.owl ENVO:01000251 biolink:NamedThing subpolar A subpolar condition is an environmental condition in which an environmental system receives low, yearly solar irradiance per unit area and is surrounded by large land masses. This results in very cold winters with temperatures potentially falling to around -40 degrees Celsius and summers which last no more than 3 months of the year with a 24-hour average temperature of at least 10 degrees Celsius. SLSO_relaxed.owl ENVO:01000343 biolink:NamedThing altitudinal condition An altitudinal condition is an environmental condition in which ranges of factors such as temperature, humidity, soil composition, solar irradiation, and tree density vary with ranges in altitude. SLSO_relaxed.owl ENVO:01000250 biolink:NamedThing subpolar coniferous forest biome A coniferous forest biome which includes communities adapted to subpolar conditions. SLSO_relaxed.owl ENVO:01000395 biolink:NamedThing temperate sclerophyllous dry forest A sclerophyllous forest which is subject to temperate climate patterns. SLSO_relaxed.owl ENVO:01000398 biolink:NamedThing temperate freshwater swamp forest A freshwater swamp forest which is subject to temperate climate patterns. SLSO_relaxed.owl ENVO:01000389 biolink:NamedThing temperate mixed broadleaf forest A temperate mixed forest which has communities of trees composed primarily of species with broad leaves. SLSO_relaxed.owl ENVO:01000390 biolink:NamedThing temperate mixed needleleaf forest A temperate mixed forest which has communities of trees composed primarily of species with needle-like leaves (e.g. conifers). SLSO_relaxed.owl ENVO:01000216 biolink:NamedThing montane shrubland biome A montane shrubland biome is a shrubland biome which occurs in regions elevated above sea level and which has community structure determined by elevation-dependent environmental conditions. SLSO_relaxed.owl ENVO:01000242 biolink:NamedThing desert scrubland A scrubland which is located in a desert. SLSO_relaxed.owl ENVO:01000245 biolink:NamedThing cropland biome A cropland ecosystem which is undergoing climactic ecological succession. SLSO_relaxed.owl ENVO:01000247 biolink:NamedThing rangeland biome A rangeland biome is an anthropogenic terrestrial biome which is primarily used for the rearing and grazing of livestock. SLSO_relaxed.owl ENVO:01000773 biolink:NamedThing village A village is a clustered human settlement or community, larger than a hamlet but smaller than a town, with a population ranging from a few hundred to a few thousand. Though often located in rural areas, the term urban village is also applied to certain urban neighbourhoods. Villages are normally permanent, with fixed dwellings; however, transient villages can occur. Further, the dwellings of a village are fairly close to one another, not scattered broadly over the landscape, as a dispersed settlement. SLSO_relaxed.owl ENVO:01000658 biolink:NamedThing dense settlement A settlement with a high density of buildings and inhabitants. SLSO_relaxed.owl ENVO:01000267 biolink:NamedThing atmosphere An atmosphere is a layer of gases surrounding a material body of sufficient mass that is held in place by the gravity of the body. SLSO_relaxed.owl ENVO:01001678 biolink:NamedThing fluid layer A layer which is composed primarily of some fluid. SLSO_relaxed.owl ENVO:01000543 biolink:NamedThing atmospheric layer A layer that is part of the atmosphere. SLSO_relaxed.owl ENVO:01001273 biolink:NamedThing liquid layer A layer which is primarily composed of some liquid material. SLSO_relaxed.owl ENVO:01001680 biolink:NamedThing gaseous front A fluid front which is composed primarily of gaseous material and separates at least two gaseous masses. SLSO_relaxed.owl ENVO:01001683 biolink:NamedThing gaseous surface layer A fluid surface layer which is composed primarily of some gaseous material. SLSO_relaxed.owl ENVO:01000268 biolink:NamedThing atmospheric water vapour Atmospheric water vapour is water vapour that is part of an atmosphere. SLSO_relaxed.owl ENVO:01000277 biolink:NamedThing water ice Ice which is formed from water. SLSO_relaxed.owl ENVO:01001138 biolink:NamedThing carbon dioxide ice Ice which is primarily composed of carbon dioxide. SLSO_relaxed.owl ENVO:01000283 biolink:NamedThing lake layer A layer which is part of a lake. SLSO_relaxed.owl ENVO:01000325 biolink:NamedThing aquatic layer A layer in a water mass, itself composed primarily of water. SLSO_relaxed.owl ENVO:01000295 biolink:NamedThing marine layer A layer that is part of a marine water body. SLSO_relaxed.owl ENVO:01001191 biolink:NamedThing water surface The surface layer of a volume of water. SLSO_relaxed.owl ENVO:01001308 biolink:NamedThing hydroform A liquid astronomical body part which is primarily composed of a continuous volume of liquid water and is held in shape or sustained by an environmental process. SLSO_relaxed.owl ENVO:01000303 biolink:NamedThing endolithic environment An endolithic environment is an environment that exists within solid rock. SLSO_relaxed.owl ENVO:01000309 biolink:NamedThing cold environment An environment which has a lower temperature than some local or global average. SLSO_relaxed.owl ENVO:01000313 biolink:NamedThing anthropogenic environment An anthropogenic environment is an environmental system which is the product of human activity. SLSO_relaxed.owl ENVO:01000951 biolink:NamedThing natural environment An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition. SLSO_relaxed.owl ENVO:01000997 biolink:NamedThing environmental system determined by a quality An environmental system which is determined by materials bearing roughly homogeneous qualities. SLSO_relaxed.owl ENVO:01000998 biolink:NamedThing environmental system determined by a material An environmental system within which an environmental material strongly influences the system's composition and properties. SLSO_relaxed.owl ENVO:01001000 biolink:NamedThing environmental system determined by an organism An environmental system which is determined by a living organism. SLSO_relaxed.owl ENVO:01001701 biolink:NamedThing tropical environment An environment which has a climate with continually high temperatures and with considerable precipitation, at least during part of the year. SLSO_relaxed.owl ENVO:01001702 biolink:NamedThing subtropical environment An environment which has a climate with warm temperatures and with meagre precipitation. SLSO_relaxed.owl ENVO:01001703 biolink:NamedThing polar environment An environment which is located in a part of an astronomical body subject to polar climatic conditions. SLSO_relaxed.owl ENVO:01001704 biolink:NamedThing subpolar environment An environment which is located in a part of an astronomical body subject to subpolar climatic conditions. SLSO_relaxed.owl ENVO:01001705 biolink:NamedThing temperate environment An environment which is located in a part of an astronomical body subject to temperate climatic conditions. SLSO_relaxed.owl ENVO:2100000 biolink:NamedThing anatomical entity environment An environment which is determined by an anatomical entity. SLSO_relaxed.owl OBO:RBO_00000016 biolink:NamedThing radiation environment Radiation classified by where the exposure to the radiation is occurring. SLSO_relaxed.owl ENVO:01000307 biolink:NamedThing saline water environment An environmental system which has its properties and dynamics determined by saline water. SLSO_relaxed.owl ENVO:01000317 biolink:NamedThing aquatic environment An environment whose dynamics are strongly influenced by water. SLSO_relaxed.owl ENVO:01001040 biolink:NamedThing saline environment An environment which is determined by materials which bear significant concentrations of salts. SLSO_relaxed.owl ENVO:01001053 biolink:NamedThing saline aerosol environment An environmental system which has its properties and dynamics determined by a saline aerosol. SLSO_relaxed.owl ENVO:01000314 biolink:NamedThing high osmolarity environment A high osmolarity environment is an environment in which entities are exposed to high concentrations of solutes. SLSO_relaxed.owl ENVO:01000315 biolink:NamedThing acidic environment An acidic environment is an environment in which material entities are exposed to a low pH. SLSO_relaxed.owl ENVO:01001048 biolink:NamedThing sediment environment An environmental system which has its properties and dynamics determined by sediment. SLSO_relaxed.owl ENVO:01001052 biolink:NamedThing aerosol environment An environmental system which has its properties and dynamics determined by an aerosol. SLSO_relaxed.owl ENVO:01000319 biolink:NamedThing rocky slope A rocky slope is a slope which has a surface primarily composed of rock. SLSO_relaxed.owl ENVO:01000321 biolink:NamedThing sea water environment An environmental system determined by seawater. SLSO_relaxed.owl ENVO:01000323 biolink:NamedThing atmospheric boundary layer The atmospheric boundary layer is the lowest layer of an atmosphere which is strongly influenced by its contact with a planetary surface with strong vertical mixing and in which physical quantities such as flow velocity, temperature, and moisture display rapid fluctuations (turbulence). SLSO_relaxed.owl ENVO:01000544 biolink:NamedThing boundary layer A boundary layer is a layer of fluid in the immediate vicinity of a bounding surface where the effects of viscosity are significant enough to distort the surrounding non-viscous flow. SLSO_relaxed.owl ENVO:01001310 biolink:NamedThing liquid surface layer A surface layer which is composed primarily of some liquid. SLSO_relaxed.owl ENVO:01000328 biolink:NamedThing dome swamp A dome swamp is a swamp which occurs in a depression where deeper waters at the centre of the swamp allow trees to grow taller relative to those in shallower regions of the depression. This creates a dome-like shape. SLSO_relaxed.owl ENVO:01000335 biolink:NamedThing understory An understory is a layer of plant life which grows below the canopy without penetrating it. SLSO_relaxed.owl ENVO:01000355 biolink:NamedThing vegetation layer A layer which is determined by a form of vegetation. SLSO_relaxed.owl ENVO:01000336 biolink:NamedThing shrub layer A shrub layer is a layer of vegetation in a woodland or forest consisting of low, woody vegetation of frutescent form. SLSO_relaxed.owl ENVO:01000337 biolink:NamedThing herb and fern layer A herb and fern layer is a layer of a forest or woodland which is composed of all vascular plant life that are one metre or less in height. SLSO_relaxed.owl ENVO:01001242 biolink:NamedThing canopy A vegetation layer which is formed by a collection of individual plant crowns, themselves constituting part of the aboveground portion of a plant community. SLSO_relaxed.owl ENVO:01000340 biolink:NamedThing alpine An altitudinal condition which inheres in a bearer by virtue of the bearer having a monthly mean temperature is less than 10 degrees Celsius and being located at altitudes above the tree line and below the snowline. SLSO_relaxed.owl ENVO:01000342 biolink:NamedThing montane An altitudinal condition which inheres in a bearer by virtue of the bearer being located at an altitude between mid-altitude forests and the tree line. SLSO_relaxed.owl ENVO:01001275 biolink:NamedThing solid layer A layer which is primarily composed of some solid material, allowing for non-solid parts such as interstitial pockets of gas or liquid. SLSO_relaxed.owl ENVO:06105266 biolink:NamedThing soil layer A layer that is composed primarily of soil. SLSO_relaxed.owl ENVO:01000408 biolink:NamedThing environmental zone A site which has its extent determined by the presence or influence of one or more components of an environmental system or the processes occurring therein. SLSO_relaxed.owl ENVO:01000413 biolink:NamedThing old plant A whole plant which is relatively old SLSO_relaxed.owl PO:0000003 biolink:NamedThing whole plant A plant structure (PO:0005679) which is a whole organism. SLSO_relaxed.owl ENVO:01000414 biolink:NamedThing young plant A whole plant which is relatively young. SLSO_relaxed.owl ENVO:01000744 biolink:NamedThing human dwelling A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning. SLSO_relaxed.owl ENVO:01000426 biolink:NamedThing room A building part which is separated from other building parts by one or more interior walls and, optionally, outdoor areas by one or more exterior walls. SLSO_relaxed.owl ENVO:01000465 biolink:NamedThing building wall Building walls are bulding parts which serve to support roofs, floors and ceilings; enclose a space as part of the building envelope; give buildings form; and to provide shelter and security. SLSO_relaxed.owl ENVO:01000470 biolink:NamedThing building envelope A building envelope is a building part composed of those building parts which physically separate the interior of a building from its surrounding environment. The building envelope provides resistance to air, water, heat, light, and noise transfer. The three basic elements of a building envelope are a weather barrier, air barrier, and thermal barrier. SLSO_relaxed.owl ENVO:01000471 biolink:NamedThing ceiling SLSO_relaxed.owl ENVO:01000472 biolink:NamedThing building roof A roof is the covering on the uppermost part of a building which provides protection from animals and weather, notably rain, but also heat, wind and sunlight. A roof is also the framing or structure which supports the covering SLSO_relaxed.owl ENVO:01001224 biolink:NamedThing office A building part within which administrative work is done by an organisations users in order to support and realise the objectives of that organization. SLSO_relaxed.owl ENVO:01000456 biolink:NamedThing concrete masonry unit A concrete masonry unit is a large, rectangular masonry unit primarily composed of concrete. SLSO_relaxed.owl ENVO:01000475 biolink:NamedThing brick A brick is a masonry unit which is composed of kneaded clay-bearing soil, expanded clay aggregate, sand and lime, or concrete material, fire-hardened or air-dried. SLSO_relaxed.owl ENVO:01000469 biolink:NamedThing exterior wall An exterior wall is a building wall which separates the interior of a building from the buildings surrounding environment. SLSO_relaxed.owl ENVO:01000506 biolink:NamedThing concrete exterior wall A concrete exterior wall is an exterior wall that is composed primarily of concrete. SLSO_relaxed.owl ENVO:01000510 biolink:NamedThing sheet-iron building roof A sheet-iron building roof is a building roof that is built from sheets of iron. SLSO_relaxed.owl ENVO:01000513 biolink:NamedThing asbestos building roof An asbestos building roof is a building roof that is built from asbestos. SLSO_relaxed.owl ENVO:01000515 biolink:NamedThing tiled building roof A tile building roof is a building roof that is built using tiles. SLSO_relaxed.owl ENVO:01000516 biolink:NamedThing toilet fixture A fixture which is used primarily for the collection and, in some cases, disposal of human urine and feces. SLSO_relaxed.owl ENVO:01000538 biolink:NamedThing stratosphere The layer of the atmosphere which is sandwiched between the troposphere and mesosphere. Of the energy that reaches the Earth from the sun, only 3% is absorbed in the stratosphere, but that includes the vitally important process of absorption of ultraviolet radiation by the stratospheric ozone layer. The stratosphere is cloudless and dust free, and almost unaffected by the turbulent conditions of the underlying level of the atmosphere. (Source: WRIGHT) SLSO_relaxed.owl ENVO:01000539 biolink:NamedThing mesosphere The mesosphere is part of the earth's atmosphere which is between the stratosphere and the thermosphere in which temperature decreases with altitude to the atmosphere's absolute minimum SLSO_relaxed.owl ENVO:01000540 biolink:NamedThing troposphere The lowest of the concentric layers of the atmosphere, occurring between the Earth's surface and the tropopause. It is the zone where atmospheric turbulence is at its greatest and where the bulk of the Earth's weather is generated. It contains almost all the water vapour and aerosols and three-quarters of the total gaseous mass of the atmosphere. Throughout the troposphere temperature decreases with height at a mean rate of 6.5°C/km and the whole zone is capped by either an inversion of temperature or an isothermal layer at the tropopause. (Source: WHIT) SLSO_relaxed.owl ENVO:01000541 biolink:NamedThing thermosphere The thermosphere is a part of the earth's atmosphere that begins at about 50 miles (80 kilometers) above the earth's surface, extends to outer space, and is characterized by steadily increasing temperature with height SLSO_relaxed.owl ENVO:01001681 biolink:NamedThing weather front A gaseous front which separates two masses of air with different densities and is a principal cause of meteorological phenomena. SLSO_relaxed.owl ENVO:01001679 biolink:NamedThing fluid front A fluid interface which separates two fluid masses with differing properties. SLSO_relaxed.owl ENVO:01000601 biolink:NamedThing motor vehicle A motor vehicle is a vehicle which is propelled by an engine or motor and that does not operate on rails. SLSO_relaxed.owl ENVO:01001488 biolink:NamedThing aircraft A vehicle which is able to travel through air in an atmosphere. SLSO_relaxed.owl ENVO:01000624 biolink:NamedThing hydrological condensation process Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase. SLSO_relaxed.owl ENVO:01000724 biolink:NamedThing condensation process Condensation is a process during which a gas undergoes a phase transition into a liquid. SLSO_relaxed.owl ENVO:02500031 biolink:NamedThing hydrological process An environmental process which has water - in any of its states - as a participant. SLSO_relaxed.owl ENVO:01000982 biolink:NamedThing water flow process A material transport process during which a volume of liquid water is transported due to a disequilibria in physical forces. SLSO_relaxed.owl ENVO:01001220 biolink:NamedThing water accumulation process A process during which liquid water accumulates in a site, most often in some form of container. SLSO_relaxed.owl ENVO:01001549 biolink:NamedThing freezing of water into water ice A freezing process during which liquid water is transformed into water ice. SLSO_relaxed.owl ENVO:01001618 biolink:NamedThing ice accumulation process A material accumulation process during which ice forms in an environmental material or an existing accumulation of ice increases in mass. SLSO_relaxed.owl ENVO:01001619 biolink:NamedThing snow and ice accumulation process A material accumulation process during which a accumulation of snow and ice forms or increases in mass. SLSO_relaxed.owl ENVO:03000055 biolink:NamedThing desublimation of water vapour into ice A desublimation process during which water vapour is frozen into water ice. SLSO_relaxed.owl ENVO:01000635 biolink:NamedThing planetary landmass A landmass which is part of a planet. SLSO_relaxed.owl ENVO:01001782 biolink:NamedThing landmass A large continuous area of land, either surrounded by sea or contiguous with another landmass. SLSO_relaxed.owl ENVO:01000638 biolink:NamedThing planetary crust A planetary crust is the outermost solid shell of a rocky planet or natural satellite, which is chemically distinct from the underlying mantle. SLSO_relaxed.owl ENVO:01000640 biolink:NamedThing planetary mantle A planetary mantle is a planetary layer which is an interior part of a terrestrial planet or other rocky body large enough to have differentiation by density. SLSO_relaxed.owl ENVO:01000668 biolink:NamedThing geological fault A geological fault is a planar fracture or discontinuity in a volume of rock, across which there has been significant displacement as a result of rock mass movement. SLSO_relaxed.owl ENVO:01000669 biolink:NamedThing active geological fault An active fault is a fault that is likely to become the source of another earthquake sometime in the future. Geologists commonly consider faults to be active if there has been movement observed or evidence of seismic activity during the last 10,000 years. SLSO_relaxed.owl ENVO:01000676 biolink:NamedThing contaminated air Contaminated air is air which has sufficient concentrations of environmental pollutants such that it may adversely affect a given ecosystem. SLSO_relaxed.owl ENVO:01000828 biolink:NamedThing humid air Air which has increased levels of water vapour. SLSO_relaxed.owl ENVO:01000677 biolink:NamedThing earthquake An earthquake is a process during which energy is released in an astronomical body's crust, causing the displacement of crustal parts and the generation of seismic waves. SLSO_relaxed.owl ENVO:03000010 biolink:NamedThing material transport process A process during which material is displaced from its original location and transported either to a new location or back to the original location. SLSO_relaxed.owl ENVO:01000694 biolink:NamedThing geological subsidence A material transport process during which a geological surface shifts downward relative to a datum such as sea-level. SLSO_relaxed.owl ENVO:01000875 biolink:NamedThing precipitation process A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force. SLSO_relaxed.owl ENVO:01001093 biolink:NamedThing tectonic movement A process during which pieces of a planetary crust and uppermost mantle move. SLSO_relaxed.owl ENVO:01001334 biolink:NamedThing advective transport process A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged. SLSO_relaxed.owl ENVO:01001346 biolink:NamedThing erosion An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited. SLSO_relaxed.owl ENVO:01001367 biolink:NamedThing primary aerosol formation process A material transport process during which solid or liquid particles are directly introduced into a volume of gas. SLSO_relaxed.owl ENVO:01003010 biolink:NamedThing convective transport process A material transport process which arises spontaneously due to physical heterogeneities in a portion of a material and forces which act throughout its volume. SLSO_relaxed.owl ENVO:01003013 biolink:NamedThing material diffusion process A material transport process during which material moves from a region of higher concentration to a region of lower concentration. SLSO_relaxed.owl OBO:RBO_00005009 biolink:NamedThing space flight Activity carried out by crewed or robotic vehicles outside the Earth's atmmosphere. SLSO_relaxed.owl ENVO:01000678 biolink:NamedThing tectonic earthquake An earthquake caused by the sudden release of energy accumulated in an astronomical body's crust, as the elastic strain placed on constituent rock masses causes them to fracture. SLSO_relaxed.owl ENVO:01001476 biolink:NamedThing body of liquid A liquid astronomical body part which is continuous and is delimited by physical discontinuities or non-liquid boundaries. SLSO_relaxed.owl ENVO:01000689 biolink:NamedThing tsunami A tsunami is a process during which a series of waves is generated in a water body, typically an ocean or large lake, by the displacement of a large volume of water. Earthquakes, volcanic eruptions and other underwater explosions (including detonations of underwater nuclear devices), landslides, glacier calvings, meteorite impacts and other disturbances above or below water all have the potential to generate a tsunami. SLSO_relaxed.owl ENVO:01000981 biolink:NamedThing mass liquid flow A process whereby a volume of liquid moves due to a disequilibrium of physical forces. SLSO_relaxed.owl ENVO:01001342 biolink:NamedThing tidal flow process A water flow process during which movements of water masses caused by varying gravitational and rotational forces from astronomical bodies, combined with the rotation of the astronomical body containing the water mass, cause waters to undergo periodic depth oscillations (tides). SLSO_relaxed.owl ENVO:01000703 biolink:NamedThing hydrological precipitation process Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity. SLSO_relaxed.owl ENVO:01001510 biolink:NamedThing material congelation process A material transformation process during which a material's viscosity increase either through a reduction in temperature, through chemical reactions, or other physical effects. SLSO_relaxed.owl ENVO:01000726 biolink:NamedThing desublimation process Desublimation is a process in which a portion of some gas undergoes a phase transition into a portion of some solid. SLSO_relaxed.owl ENVO:01001548 biolink:NamedThing freezing A material congelation process during which a liquid turns into a solid when its temperature is lowered below its melting point. SLSO_relaxed.owl ENVO:01000743 biolink:NamedThing land consumption process A process in which natural ecosystems present over an expanse of land are removed and replaced with anthropogenic ecosystems. SLSO_relaxed.owl ENVO:01000952 biolink:NamedThing anthropisation A process during which a natural environmental system is altered by human action. SLSO_relaxed.owl ENVO:01001200 biolink:NamedThing anthropised terrestrial environmental zone A terrestrial zone which is bounded by constructed, manufactured, or other anthropogenic material entities. SLSO_relaxed.owl ENVO:01000755 biolink:NamedThing aeroform A part of an astronomical body which is primarily composed of a continuous volume of gaseous or aerosolised material held in shape by one or more environmental processes. SLSO_relaxed.owl ENVO:01001645 biolink:NamedThing gaseous part of an atmosphere That part of an atmosphere which is composed of gaseous material. SLSO_relaxed.owl ENVO:01001246 biolink:NamedThing agricultural process A process during which humans rear animals or plants on land for harvest and consumption. SLSO_relaxed.owl ENVO:01001795 biolink:NamedThing ecosystem process An environmental process either driven by or primarily impacting the parts or emergent properties of an ecosystem. SLSO_relaxed.owl ENVO:01001852 biolink:NamedThing energy transfer process A process during which one entity loses energy to another entity. SLSO_relaxed.owl ENVO:02500003 biolink:NamedThing atmospheric process A process which occurs within an atmosphere. SLSO_relaxed.owl ENVO:02500027 biolink:NamedThing anthropogenic environmental process An environmental process which is driven by the action of humans. SLSO_relaxed.owl ENVO:02500036 biolink:NamedThing environmental pollution An environmental system process that results in the introduction of contaminants into an environment. SLSO_relaxed.owl ENVO:03000008 biolink:NamedThing compaction process A physical process during which atoms, molecules, or other consituents of a material entity are forced closer together. SLSO_relaxed.owl ENVO:03000009 biolink:NamedThing material accumulation process A process during which the mass of one or more materials, present within a given site, increases. SLSO_relaxed.owl ENVO:03000043 biolink:NamedThing material transformation process A process during which a portion of some environmental material is converted into a different material or a collection of materials. SLSO_relaxed.owl ENVO:01000792 biolink:NamedThing mass gaseous flow A process whereby a large volume of gas moves due to a disequilibrium of physical forces. SLSO_relaxed.owl ENVO:01001747 biolink:NamedThing mass fluid flow An advective transport process during which a fluid moves. SLSO_relaxed.owl ENVO:01000793 biolink:NamedThing atmospheric wind SLSO_relaxed.owl ENVO:01001085 biolink:NamedThing atmospheric aerosol formation An aerosol formation process which occurs in an atmosphere. SLSO_relaxed.owl ENVO:01000798 biolink:NamedThing plasma A material entity which is composed of a volume of unbound positive and negative particles in roughly equal numbers, conducts electricity, and possesses internal magnetic fields. SLSO_relaxed.owl ENVO:01001088 biolink:NamedThing aerosolised liquids An aerosol which has non-gaseous parts that are primarily composed of liquid droplets. SLSO_relaxed.owl ENVO:01000799 biolink:NamedThing astronomical body An object which is naturally occuring, bound together by gravitational or electromagnetic forces, and surrounded by space. SLSO_relaxed.owl ENVO:01000804 biolink:NamedThing astronomical object An object which is composed of one or more gravitationally bound structures that are associated with a position in space. SLSO_relaxed.owl ENVO:01000800 biolink:NamedThing planet A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals. SLSO_relaxed.owl ENVO:01000801 biolink:NamedThing star An astronomical object which is composed primarily of luminous plasma held in a spherical form by gravitational forces. SLSO_relaxed.owl ENVO:01001068 biolink:NamedThing meteoroid An astronomical body which is composed of rocky or metallic materials and is considerably smaller than asteroids. SLSO_relaxed.owl ENVO:01001686 biolink:NamedThing mass of environmental material An object which is composed primarily of an environmental material SLSO_relaxed.owl ENVO:01001122 biolink:NamedThing gas planet A planet which is primarily composed of hydrogen and helium. SLSO_relaxed.owl ENVO:01001688 biolink:NamedThing mass of fluid An object which is composed primarily of a fluid. SLSO_relaxed.owl ENVO:01001691 biolink:NamedThing mass of compounded environmental materials An mass of environmental materials which has appreciable quantities of several individual materials, such that the removal of one would convert the mass into a different entity. SLSO_relaxed.owl ENVO:01001814 biolink:NamedThing organic object An object which is formed as a result of one or more biological processes and is composed primarily of organic material. SLSO_relaxed.owl ENVO:01001008 biolink:NamedThing meteor A meteor is any matter- or energy-based entity which is located in the atmosphere of an astronomical body. SLSO_relaxed.owl ENVO:01000819 biolink:NamedThing hydrosphere An astronomical body part which is composed of the combined mass of water found on, under, and over the surface of a planet. SLSO_relaxed.owl ENVO:01000829 biolink:NamedThing water vapour saturated air Air which has a partial pressure of water vapour equal or near equal to its equilibrium vapor pressure at a given temperature. SLSO_relaxed.owl ENVO:01000830 biolink:NamedThing water-based rainfall A hydrological precipitation process in which atmospheric water vapour condenses to form droplets of liquid water massive enough to fall to a planetary surface due to the planet's gravity. SLSO_relaxed.owl ENVO:01000895 biolink:NamedThing snowfall A hydrological process in which irregular aggregates of snow fall to the surface of an astronomical body. SLSO_relaxed.owl ENVO:01000831 biolink:NamedThing droplet A droplet is a small column of liquid, bounded completely or almost completely by free surfaces which maintains its shape due to the surface tension of the liquid. SLSO_relaxed.owl ENVO:01001690 biolink:NamedThing mass of liquid An object which is composed primarily of a liquid. SLSO_relaxed.owl ENVO:01000832 biolink:NamedThing raindrop A droplet formed by condensation of vapour in an atmosphere and which is sufficiently massive to overcome atmospheric resistance and fall to a planetary surface due to gravity. SLSO_relaxed.owl ENVO:01000833 biolink:NamedThing water droplet A droplet of water SLSO_relaxed.owl ENVO:01000834 biolink:NamedThing water raindrop SLSO_relaxed.owl ENVO:01000846 biolink:NamedThing water ice crystal A crystal which is primarily composed of water ice. SLSO_relaxed.owl ENVO:01000869 biolink:NamedThing area of scrub An area of a planet's surface which is primarily covered by a shrubs, young trees, or stunted trees.. The surfaces of this area are in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction. SLSO_relaxed.owl ENVO:01000883 biolink:NamedThing area of developed open space An area of a planet's surface which is primarily covered by cultivated or anthropically maintained vegetation planted for recreation, erosion control, or aesthetic purposes interspersed by constructed or manufactured objects and materials. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction. SLSO_relaxed.owl ENVO:01000888 biolink:NamedThing area of gramanoid or herbaceous vegetation An area of a planet's surface which is primarily covered by gramanoid or herbaceous vegetation and which is not subject to intensive management by humans. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction. SLSO_relaxed.owl ENVO:01000933 biolink:NamedThing residential building A human house which serves as a long-term shelter for its inhabitants and within which they store personal property. SLSO_relaxed.owl ENVO:01001434 biolink:NamedThing anthropogenic ecosystem conversion process A process during which an ecosystem - natural or anthropised - is changed by the actions of humans. SLSO_relaxed.owl ENVO:01000958 biolink:NamedThing terrestrial planet A planet that is composed primarily of silicate rocks or metals. SLSO_relaxed.owl ENVO:01001136 biolink:NamedThing ocean planet A planet which has a surface layer that nearly completely or completely covered by water, and which has a substantial portion of its mass composed of water. SLSO_relaxed.owl ENVO:01001137 biolink:NamedThing ice planet A planet which has a surface layer that nearly completely or completely covered by ice, and which has a substantial portion of its mass composed of ice. SLSO_relaxed.owl ENVO:01001170 biolink:NamedThing active ecosystem management process A process during which an ecosystem, its parts, or the processes it participates in are modified by human intervention to accomplish an objective. SLSO_relaxed.owl ENVO:01001500 biolink:NamedThing anthropogenic light pollution A pollution process during which artificial light with wavelengths in the visible spectrum is released into the environment. SLSO_relaxed.owl ENVO:2000012 biolink:NamedThing anthropogenic generation of energy The generation of energy for use by humans SLSO_relaxed.owl ENVO:01001001 biolink:NamedThing plant-associated environment An environmental system determined by a green plant. SLSO_relaxed.owl ENVO:01001002 biolink:NamedThing animal-associated environment An environmental system determined by an animal. SLSO_relaxed.owl ENVO:01001010 biolink:NamedThing hydrometeor A meteor which is primarily composed of water. SLSO_relaxed.owl ENVO:01001012 biolink:NamedThing lithometeor A meteor which is primarily composed of rock. SLSO_relaxed.owl ENVO:01001023 biolink:NamedThing radiation A process during which energy is emitted or transmitted in the form of waves or particles through space or a material medium. SLSO_relaxed.owl ENVO:01001767 biolink:NamedThing structural collapse process A process during which the ability of a material entity to maintain its internal organisation fails, resulting in deformation and a breakdown of that organisation. SLSO_relaxed.owl OBO:RBO_00002000 biolink:NamedThing radiation exposure The process by which an entity is exposed to electromagnetic or acoustic radiation radiation energy internally or externally. SLSO_relaxed.owl OBO:RBO_00002117 biolink:NamedThing irradiation An energy transfer process in which energy in the form of particles or waves is transferred from one entity to another SLSO_relaxed.owl ENVO:01001024 biolink:NamedThing particle radiation A radiation process during which energy is transmitted or emitted by means of fast-moving subatomic particles. SLSO_relaxed.owl ENVO:01001026 biolink:NamedThing electromagnetic radiation A radiation process during which waves (or their quanta, photons) of the electromagnetic field propagate (radiate) through space carrying electromagnetic energy. SLSO_relaxed.owl ENVO:01001054 biolink:NamedThing non-saline aerosol environment An environmental system which has its properties and dynamics determined by an aerosol with a low concentration of dissolved solutes. SLSO_relaxed.owl ENVO:01001084 biolink:NamedThing particulate matter formation process A process during which microscopic solid or liquid objects are formed. SLSO_relaxed.owl ENVO:01001205 biolink:NamedThing lithification A process during which sediments compact under pressure, expel connate fluids, and gradually become solid sedimentary rock. SLSO_relaxed.owl ENVO:01001654 biolink:NamedThing aerosol formation process A material transformation process during which solid or liquid particles form and are suspended in a mass of air, thus creating an aerosol. SLSO_relaxed.owl ENVO:01001086 biolink:NamedThing formation of a solid aerosol in an atmosphere A process during which an aerosol, consisting of solid particulates suspended in a gas, is formed in an atmosphere. SLSO_relaxed.owl ENVO:01001087 biolink:NamedThing formation of a liquid aerosol in an atmosphere A process during which an aerosol, consisting of droplets of liquid suspended in gas, is formed in an atmosphere. SLSO_relaxed.owl ENVO:01001089 biolink:NamedThing aerosolised solids An aerosol which has non-gaseous parts that are primarily composed of solid particles. SLSO_relaxed.owl ENVO:01001652 biolink:NamedThing atmospheric aerosol An aerosol that is suspended in an atmosphere. SLSO_relaxed.owl ENVO:01001090 biolink:NamedThing formation of a solid aerosol from gaseous material in an atmosphere A process during which microscopic solid particulates are formed from gaseous materials in an atmosphere. SLSO_relaxed.owl ENVO:01001639 biolink:NamedThing formation of a solid aerosol from liquid material in an atmosphere A process during which microscopic solid particulates are formed from liquid materials in an atmosphere. SLSO_relaxed.owl ENVO:01001091 biolink:NamedThing formation of a liquid aerosol from gaseous material in an atmosphere A process during which microscopic liquid droplets are formed from gaseous materials in an atmosphere. SLSO_relaxed.owl ENVO:01001098 biolink:NamedThing tectonic plate boundary A geomorphological feature which is formed where two or more tectonic plates move towards, away from, or along one another, resulting in deformation of the lithosphere. SLSO_relaxed.owl ENVO:01001299 biolink:NamedThing atmospheric zone An environmental zone which is part of an atmosphere. SLSO_relaxed.owl ENVO:01001147 biolink:NamedThing helium planet A gas planet which has an atmosphere composed primarily of helium. SLSO_relaxed.owl ENVO:01001155 biolink:NamedThing astrogeological gas An astrogeological volatile which is composed primarily of chemical compounds with boiling points around those of hydrogen and helium. SLSO_relaxed.owl ENVO:01001164 biolink:NamedThing geodiversity A quality which inheres in a astronomical body or astronomical body part by virtue of the variation in its material composition, participation in geological processes, and the variation in is land- and hydroforms. SLSO_relaxed.owl PATO:0001241 biolink:NamedThing physical object quality A quality which inheres in a continuant. SLSO_relaxed.owl PATO:0000051 biolink:NamedThing morphology A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. SLSO_relaxed.owl PATO:0001995 biolink:NamedThing organismal quality A quality that inheres in an entire organism or part of an organism. SLSO_relaxed.owl PATO:0002182 biolink:NamedThing molecular quality A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc. SLSO_relaxed.owl PATO:0002303 biolink:NamedThing decreased object quality A quality of an object that has a value that is decreased compared to normal or average. SLSO_relaxed.owl PATO:0002305 biolink:NamedThing increased object quality A quality of an object that has a value that is increased compared to normal or average. SLSO_relaxed.owl OBO:RBO_00005025 biolink:NamedThing non-irradiated An organism or material entity kept unexposed to radiation, for purposes of comparison to a similar organism or material entity that has been exposed to radiation SLSO_relaxed.owl OBO:RBO_00015010 biolink:NamedThing nanodosimetry A pattern (frequency and spatial distribution) of ionization events produced by energy deposition in time and space in a substance characterized by linear dimensions of the order of 1-100 nanometers. SLSO_relaxed.owl OBO:RBO_00015014 biolink:NamedThing micrometric volume A volume of matter characterised by linear dimensions of the order of 0.5- 10's of microns, referred to as the "site" in microdosimetry. SLSO_relaxed.owl ENVO:01001168 biolink:NamedThing ecosystem fragmentation process A process during which one or more parts of an ecosystem become causally isolated such that the direct flow or exchange of materials, resources, and energy between a given fragment and the remainder of the original system is severely curtailed or entirely halted. SLSO_relaxed.owl ENVO:01001824 biolink:NamedThing ecological succession An ecosystem process during which the species composition of an ecosystem gradually changes as species which are more adapted to the prevailing conditions in the ecosystem replace those which are less adapted. SLSO_relaxed.owl ENVO:02500005 biolink:NamedThing land degradation A process which diminishes the functioning of an ecosystem located on land. SLSO_relaxed.owl ENVO:02500012 biolink:NamedThing deforestation An ecosystem process during which the flora and fauna belonging to a forest are removed or destroyed. SLSO_relaxed.owl ENVO:02500014 biolink:NamedThing forest process SLSO_relaxed.owl ENVO:02500015 biolink:NamedThing forest area expansion SLSO_relaxed.owl ENVO:01001617 biolink:NamedThing snow accumulation process A material accumulation process during which the mass of snow on a surface increases. SLSO_relaxed.owl GO:0008152 biolink:NamedThing metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. SLSO_relaxed.owl GO:0009987 biolink:NamedThing cellular process Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. SLSO_relaxed.owl GO:0050896 biolink:NamedThing response to stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. SLSO_relaxed.owl ENVO:01001210 biolink:NamedThing defence against flooding A planned process during which an environmental system is modified to mitigate or nullify the impacts of flooding. SLSO_relaxed.owl ENVO:02500042 biolink:NamedThing pollution control A planned process during which the amount of pollutants released into an environmental system is regulated. SLSO_relaxed.owl ENVO:01001176 biolink:NamedThing environment associated with an aquatic invertebrate An environment which has its properties and composition largely determined by the presence of a metazoan which lacks a vetebral column and which has a habitat that is found in an aquatic environmental system. SLSO_relaxed.owl ENVO:01001309 biolink:NamedThing liquid air-water interface layer A liquid surface layer which is in contact with air. SLSO_relaxed.owl ENVO:01001192 biolink:NamedThing sediment surface The surface layer of a mass of sediment. SLSO_relaxed.owl ENVO:01001673 biolink:NamedThing fluid surface layer A surface layer which is composed primarily of some liquid or gas. SLSO_relaxed.owl ENVO:01001211 biolink:NamedThing stellar radiation An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a star. SLSO_relaxed.owl ENVO:01001501 biolink:NamedThing radiation from a manufactured product An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a manufactured product. SLSO_relaxed.owl ENVO:01001856 biolink:NamedThing liquid accumulation process A material accumulation process during which the volume of liquid entity increases. SLSO_relaxed.owl ENVO:02500002 biolink:NamedThing flooding A general and temporary condition of partial or complete inundation of normally dry land areas from the overflow of inland and/or tidal waters, and/or the unusual and rapid accumulation or runoff of surface waters from any source. A great flow along a watercourse or a flow causing inundation of lands not normally covered by water. SLSO_relaxed.owl ENVO:03000127 biolink:NamedThing acid rainfall A water-based rainfall process during which water droplets with increased acidity fall towards a planetary surface. SLSO_relaxed.owl ENVO:01001357 biolink:NamedThing desert A landform which has been rendered barren or partially barren by environmental extremes, especially by low rainfall, and which loses more liquid water by evapotranspiration than is supplied by precipitation. SLSO_relaxed.owl ENVO:01001366 biolink:NamedThing aerosolised particle formation process A process during which particles suspended in a gaseous medium are formed. SLSO_relaxed.owl ENVO:01001405 biolink:NamedThing laboratory environment An anthropogenic environment which is bounded by the building envelope of a laboratory and in which a system of manufactured products exert control on one or more of its environmental conditions. SLSO_relaxed.owl ENVO:01001429 biolink:NamedThing land conversion process An anthropisation process during which terrestrial environments - natural or anthropised - or parts thereof are altered to facilitate human activities such as agriculture, settlement, or commerce. SLSO_relaxed.owl ENVO:01001430 biolink:NamedThing agricultural land conversion process A land conversion process during which terrestrial ecosystems are altered to facilitate agricultural activities such as crop cultivation or the rearing of livestock. SLSO_relaxed.owl ENVO:01001431 biolink:NamedThing land use process An anthropogenic environmental process which includes all human activities undertaken in a natural, semi-natural, or anthropised environment. SLSO_relaxed.owl ENVO:01001437 biolink:NamedThing mining A planned environmental usage process during which a non-renewable resource such as petroleum, natural gas, or water is extracted from an ecosystem. SLSO_relaxed.owl ENVO:01001444 biolink:NamedThing usage of an environment for transportation A planned environmental usage process during which an environment facilitates the movement of materials and material objects (persons or goods) from place to place, typically with the assistance of a vehicle. SLSO_relaxed.owl ENVO:01001445 biolink:NamedThing usage of an environment for infrastructure and utilities A planned environmental usage process during which an environment supports 1) enterprises concerned with the provision to the public of essentials, such as electricity or water or 2) the basic network or foundation of capital facilities or community investments which are necessary to support economic and community activities. SLSO_relaxed.owl ENVO:01001446 biolink:NamedThing usage of an environment for residential activity A planned environmental usage process during which an environment supports the settlement and dwelling of a community of humans. SLSO_relaxed.owl ENVO:01001450 biolink:NamedThing usage of an environment for industry A planned environmental usage process during which an environment supports manufacturing facilities producing commodities that are sold with the expectation of recovering the total cost of production. SLSO_relaxed.owl ENVO:01001451 biolink:NamedThing usage of an environment for business A planned environmental usage process during which an environment supports facilities associated with commerce or the earning of a livelihood through means other than manufacturing or the provision of a public service. SLSO_relaxed.owl ENVO:01001433 biolink:NamedThing terrestrial mining A land use process during which materials of economic value are extracted from a planet, usually from an orebody, lode, vein, seam, reef or placer deposit. SLSO_relaxed.owl ENVO:01001439 biolink:NamedThing marine mining A mining process which occurs in a marine ecosystem. SLSO_relaxed.owl ENVO:01001440 biolink:NamedThing coal mining A mining process during which coal is extracted from the rocky portion of an astronomical body. SLSO_relaxed.owl ENVO:01001491 biolink:NamedThing flattened elevation An elevation which is flattened across its highest surface. SLSO_relaxed.owl ENVO:02500037 biolink:NamedThing air pollution A pollution process during which particulates or other contaminants are released into a portion of air. SLSO_relaxed.owl ENVO:02500038 biolink:NamedThing soil pollution A pollution process during which contaminants are released into soil. SLSO_relaxed.owl ENVO:02500039 biolink:NamedThing water pollution A pollution process during which contaminants are released into water. SLSO_relaxed.owl ENVO:01001502 biolink:NamedThing visible spectrum radiation from a manufactured product Radiation from a manufactured product during which light between the wavelenghts of 380 nm and 760 nm is emitted. SLSO_relaxed.owl ENVO:01001524 biolink:NamedThing frozen land Land which is below the freezing point of water. SLSO_relaxed.owl ENVO:01001564 biolink:NamedThing rain An aggregate of raindrops falling to a planetary surface during a precipitation process. SLSO_relaxed.owl PCO:0000000 biolink:NamedThing collection of organisms A material entity that consists of two or more organisms, viruses, or viroids. SLSO_relaxed.owl ENVO:01001565 biolink:NamedThing water-based rain Rain which is composed of water droplets falling to a planetary surface during a rainfall process. SLSO_relaxed.owl ENVO:01001570 biolink:NamedThing terrestrial ecoregion An ecoregion which is located on a landmass. SLSO_relaxed.owl ENVO:01001581 biolink:NamedThing sea surface layer A surface layer which is part of an ocean or sea. SLSO_relaxed.owl ENVO:01001614 biolink:NamedThing ice-bearing permafrost Permafrost which contains inclusions of water-based ice. SLSO_relaxed.owl ENVO:03000036 biolink:NamedThing sedimentation in a water body A material accumulation process during which solid particles are pulled through a water body by gravitation or centrifugal force and which ends when they settle on a solid surface. SLSO_relaxed.owl ENVO:01001620 biolink:NamedThing mass of ice and snow A object which is composed primarily of water-based snow and ice. SLSO_relaxed.owl ENVO:03000111 biolink:NamedThing snow mass A mass of snow. SLSO_relaxed.owl ENVO:01001682 biolink:NamedThing air mass An object which is composed of a continuous mass of air. SLSO_relaxed.owl ENVO:01001689 biolink:NamedThing mass of gas An object which is composed primarily of a gas. SLSO_relaxed.owl ENVO:01001698 biolink:NamedThing polar front A weather front which separates air masses of tropical and polar origin. SLSO_relaxed.owl ENVO:01001750 biolink:NamedThing straight-line wind A wind storm during which strong gusts of wind occur, transporting atmospheric gas in a linear fashion. SLSO_relaxed.owl ENVO:01001860 biolink:NamedThing wind gust An atmospheric wind which 1) has an increased rate relative to other winds in the same region and 2) is followed by a lull. SLSO_relaxed.owl ENVO:01001827 biolink:NamedThing climactic ecological succession An ecological succession process during which 1) organisms in ecological communities possess high adaptation to the conditions in the ecosystem, 2) participant communities largely fill available niches, 3) individual organisms are typically replaced by others of the same species, 4) a near equilibrium is maintained between gross primary production and total respiration and across biogeochemical cycles. SLSO_relaxed.owl ENVO:01001865 biolink:NamedThing concentration of carbon dioxide in an atmosphere The concentration of carbon dioxide when measured in air that is part of an atmosphere. SLSO_relaxed.owl PATO:0000033 biolink:NamedThing concentration of A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance. SLSO_relaxed.owl ENVO:04000003 biolink:NamedThing concentration of carbon dioxide in soil The concentration of carbon dioxide when measured in soil. SLSO_relaxed.owl ENVO:04000004 biolink:NamedThing concentration of carbon dioxide in air The concentration of carbon dioxide when measured in air. SLSO_relaxed.owl ENVO:04000006 biolink:NamedThing concentration of carbon dioxide in seawater The concentration of carbon dioxide when measured in seawater. SLSO_relaxed.owl ENVO:09000022 biolink:NamedThing concentration of clay in soil The concentration of a clay when measured in soil. SLSO_relaxed.owl ENVO:09000023 biolink:NamedThing concentration of slit in soil The concentration of a slit when measured in soil. SLSO_relaxed.owl ENVO:09000024 biolink:NamedThing concentration of sand in soil The concentration of a sand when measured in soil. SLSO_relaxed.owl ENVO:09000026 biolink:NamedThing concentration of liquid water in soil The concentration of a liquid water when measured in soil. SLSO_relaxed.owl ENVO:09000027 biolink:NamedThing concentration of salt in soil The concentration of a salt when measured in soil. SLSO_relaxed.owl ENVO:09000030 biolink:NamedThing concentration of soil organic matter in soil The concentration of a soil organic matter when measured in soil. SLSO_relaxed.owl ENVO:3100011 biolink:NamedThing concentration of dioxygen in liquid water The concentration of dioxygen when measured in liquid water. SLSO_relaxed.owl ENVO:3100060 biolink:NamedThing concentration of dioxygen in sea water The concentration of dioxygen when measured in sea water. SLSO_relaxed.owl ENVO:3200060 biolink:NamedThing concentration of oxygen in soil The concentration of oxygen when measured in soil. SLSO_relaxed.owl ENVO:3200062 biolink:NamedThing concentration of iron molecular entity in soil The concentration of iron molecular entity when measured in soil. SLSO_relaxed.owl ENVO:3200065 biolink:NamedThing concentration of sodium molecular entity in soil The concentration of sodium molecular entity when measured in soil. SLSO_relaxed.owl ENVO:3200071 biolink:NamedThing concentration of organic molecular entity in soil The concentration of organic molecular entity when measured in soil. SLSO_relaxed.owl PATO:0001655 biolink:NamedThing osmolarity A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution. SLSO_relaxed.owl PATO:0001842 biolink:NamedThing acidity A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions). SLSO_relaxed.owl ENVO:01003011 biolink:NamedThing convective A physical quality of a process which is characteristic of processes that transport material within a volume due to the combined effects of material property heterogeneity and body forces across that volume. SLSO_relaxed.owl PATO:0002062 biolink:NamedThing physical quality of a process SLSO_relaxed.owl ENVO:01003012 biolink:NamedThing advective A physical quality of a process which is characteristic of process that transport material without, themselves, changing the qualities of those materials or the processes that are unfolding within them. SLSO_relaxed.owl PATO:0002323 biolink:NamedThing temporal distribution quality A temporal distribution pattern of process occurrences within a regulation/reference process. SLSO_relaxed.owl OBO:RBO_00005072 biolink:NamedThing space flight Travel beyond the Earth's atmosphere SLSO_relaxed.owl ENVO:02000091 biolink:NamedThing coal A combustible black or brownish-black sedimentary rock usually occurring in rock strata in layers or veins called coal beds or coal seams. SLSO_relaxed.owl ENVO:02000095 biolink:NamedThing uranium ore Ore which contains uranium. SLSO_relaxed.owl ENVO:02000096 biolink:NamedThing iron ore SLSO_relaxed.owl ENVO:02000097 biolink:NamedThing gold ore SLSO_relaxed.owl ENVO:02000098 biolink:NamedThing platinum ore SLSO_relaxed.owl ENVO:02000099 biolink:NamedThing coal dust Dust which is derived from coal. SLSO_relaxed.owl ENVO:02000100 biolink:NamedThing mineral dust Dust which is derived from mineral material. SLSO_relaxed.owl ENVO:02000103 biolink:NamedThing metallic dust Dust which is composed primarily of some metallic material. SLSO_relaxed.owl ENVO:02000104 biolink:NamedThing cement dust SLSO_relaxed.owl ENVO:02000105 biolink:NamedThing clay dust Dust which is derived from clay material. SLSO_relaxed.owl ENVO:02000109 biolink:NamedThing dust from plant parts SLSO_relaxed.owl ENVO:02000137 biolink:NamedThing nuclear power reactor A nuclear reactor which is used as a source of power. SLSO_relaxed.owl ENVO:02500001 biolink:NamedThing desertification A type of land degradation in which terrestrial ecosystem becomes increasingly dry, typically losing its bodies of water as well as vegetation and wildlife. SLSO_relaxed.owl ENVO:02500011 biolink:NamedThing afforestation Establishment of a new forest by seeding or planting of nonforested land. SLSO_relaxed.owl ENVO:02500032 biolink:NamedThing planned revegetation A planned process during which human agents establish plant communities in ecosystems which have previously been, partially or wholly, stripped of existing plant communities. SLSO_relaxed.owl ENVO:02500028 biolink:NamedThing planetary erosion An action of exogenic processes (such as water flow or wind) which remove environmental material from one part of a planet's crust, transporting it to another location where it is deposited. SLSO_relaxed.owl ENVO:02500043 biolink:NamedThing pollution monitoring A monitoring process that assays the level of environmental pollutants to determine the presence of effect of environmental pollution. SLSO_relaxed.owl OBO:RBO_00002122 biolink:NamedThing environmental radiation monitoring Environmental monitoring that includes continual assay for radiation dose or quality. SLSO_relaxed.owl OBO:RBO_00002123 biolink:NamedThing natural environment monitoring Monitoring within an environment which was not man-made. SLSO_relaxed.owl OBO:RBO_00002124 biolink:NamedThing anthropogenic environment monitoring Monitoring within a man-made or constructed environment SLSO_relaxed.owl ENVO:03000128 biolink:NamedThing acidic water-based rain Water-based rain which has increased acidity. SLSO_relaxed.owl ENVO:03520007 biolink:NamedThing snow crystal A water ice crystal which is constituted by water molecules aligned in a hexagonal array. SLSO_relaxed.owl ENVO:06105271 biolink:NamedThing soil texture Texture which inheres in soil. SLSO_relaxed.owl PATO:0000150 biolink:NamedThing texture A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. SLSO_relaxed.owl ENVO:06105304 biolink:NamedThing water-holding capacity of soil Water-holding capacity which inheres in some soil. SLSO_relaxed.owl ENVO:09200000 biolink:NamedThing temperature of environmental material The temperature of some environmental material. SLSO_relaxed.owl ENVO:09200001 biolink:NamedThing temperature of air The temperature of some air. SLSO_relaxed.owl ENVO:09200012 biolink:NamedThing temperature of soil The temperature of some soil. SLSO_relaxed.owl ENVO:09200014 biolink:NamedThing temperature of water The temperature of some water. SLSO_relaxed.owl PATO:0001306 biolink:NamedThing decreased temperature A temperature which is relatively low. SLSO_relaxed.owl PATO:0001985 biolink:NamedThing frozen A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point. SLSO_relaxed.owl ENVO:09200002 biolink:NamedThing environmental system process quality The quality of a environmental system process. SLSO_relaxed.owl PATO:0001236 biolink:NamedThing process quality A quality which inheres in an process. SLSO_relaxed.owl OBO:RBO_00002021 biolink:NamedThing study modality The specific manner, characteristic, pattern of application, or the employment of any technology, approach or formal procedure to implement the study plan to generate a study type. SLSO_relaxed.owl OBO:RBO_00015011 biolink:NamedThing particle track structure The complete set of spatial coordinates of energy deposition events along a particle track in matter SLSO_relaxed.owl ENVO:09200004 biolink:NamedThing porosity of soil The porosity of some soil. SLSO_relaxed.owl ENVO:09200009 biolink:NamedThing structure of soil The structure of some soil. SLSO_relaxed.owl ENVO:09200008 biolink:NamedThing composition of soil The composition of some soil. SLSO_relaxed.owl PATO:0000973 biolink:NamedThing porosity A structure quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices. SLSO_relaxed.owl ENVO:09200034 biolink:NamedThing porosity of snow The porosity of some snow. SLSO_relaxed.owl ENVO:09200035 biolink:NamedThing porosity of water ice The porosity of some water ice. SLSO_relaxed.owl PATO:0000984 biolink:NamedThing porous A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. SLSO_relaxed.owl PATO:0000025 biolink:NamedThing composition A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts. SLSO_relaxed.owl ENVO:09200017 biolink:NamedThing composition of water The composition of some water. SLSO_relaxed.owl PATO:0001759 biolink:NamedThing granular A composition quality inhering in a bearer by virtue of the bearer's containing granules. SLSO_relaxed.owl PATO:0000141 biolink:NamedThing structure A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form. SLSO_relaxed.owl PATO:0001411 biolink:NamedThing structured A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. SLSO_relaxed.owl PATO:0001412 biolink:NamedThing unstructured A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. SLSO_relaxed.owl PATO:0001485 biolink:NamedThing condensed A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. SLSO_relaxed.owl PATO:0002124 biolink:NamedThing laminar A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer. SLSO_relaxed.owl ENVO:09200010 biolink:NamedThing acidity of soil The acidity of some soil. SLSO_relaxed.owl ENVO:3100030 biolink:NamedThing acidity of water The acidity of some water. SLSO_relaxed.owl PATO:0001428 biolink:NamedThing medium acidity A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base. SLSO_relaxed.owl ENVO:09200013 biolink:NamedThing wetness of soil The wetness of some soil. SLSO_relaxed.owl PATO:0001823 biolink:NamedThing wet A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. SLSO_relaxed.owl PATO:0001824 biolink:NamedThing dry A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. SLSO_relaxed.owl ENVO:09200015 biolink:NamedThing humidity of soil The humidity of some soil. SLSO_relaxed.owl PATO:0015009 biolink:NamedThing humidity A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content. SLSO_relaxed.owl PATO:0015010 biolink:NamedThing increased humidity An increase in humidity. SLSO_relaxed.owl ENVO:2000013 biolink:NamedThing generation of energy from coal SLSO_relaxed.owl ENVO:2000016 biolink:NamedThing potential energy Energy possessed by an object because of its position relative to other objects, stresses within itself, its electric charge, or other factors. SLSO_relaxed.owl ENVO:2000017 biolink:NamedThing kinetic energy Energy which is realised through motion. SLSO_relaxed.owl ENVO:2000018 biolink:NamedThing mixed potential and kinetic energy Energy which is the sum of 1) kinetic energy and 2) potential energy. SLSO_relaxed.owl ENVO:2000025 biolink:NamedThing nuclear energy potential energy that binds nucleons to form the atomic nucleus (and nuclear reactions). SLSO_relaxed.owl ENVO:2000030 biolink:NamedThing radiant energy Potential energy which is stored in the fields of propagated by electromagnetic radiation. SLSO_relaxed.owl ENVO:2000032 biolink:NamedThing thermal energy Kinetic energy which is realised through the microscopic motion of particles. SLSO_relaxed.owl ENVO:2000034 biolink:NamedThing geothermal energy Thermal energy which propagates through a solid (typically rocky) astronomical body. SLSO_relaxed.owl ENVO:2000035 biolink:NamedThing stellar radiation energy SLSO_relaxed.owl ENVO:2100004 biolink:NamedThing integumental system environment SLSO_relaxed.owl ExO:0000030 biolink:NamedThing ecosphere The earth, all of the organisms living on it, and all of the environmental factors, which act on the organisms. The volume of area where biological matter can exist, slightly above, on or below ground level. SLSO_relaxed.owl ExO:0000033 biolink:NamedThing human population An exposure_receptor that is a group of Homo sapiens inhabiting a given area. SLSO_relaxed.owl ExO:0000042 biolink:NamedThing human individual Being or characteristic of a single thing or person. SLSO_relaxed.owl ExO:0000038 biolink:NamedThing health status The condition of an organism in all aspects (e.g., functional or metabolic efficiency). SLSO_relaxed.owl ExO:0000089 biolink:NamedThing human attribute An attribute describing some aspect of an individual or human population. SLSO_relaxed.owl ExO:0000102 biolink:NamedThing age How long something or someone has existed; elapsed time since birth. SLSO_relaxed.owl ExO:0000103 biolink:NamedThing influencing factor Other conditions with the power to have an effect on health status. SLSO_relaxed.owl ExO:0000110 biolink:NamedThing sex The assemblage of physical properties or qualities by which male is distinguished from female; the physical difference between male and female; the distinguishing peculiarity of male or female. SLSO_relaxed.owl GENO:0000481 biolink:NamedThing genomic feature A sequence feature (continuous extent of biological sequence) that is of genomic origin (i.e. carries sequence from the genome of a cell or organism) SLSO_relaxed.owl GENO:0000897 biolink:NamedThing genomic entity An generically dependent continuant that carries biological sequence that is part of or derived from a genome. SLSO_relaxed.owl GENO:0000660 biolink:NamedThing genomic feature set A set of genomic features (i.e. sequence features that are of genomic origin). SLSO_relaxed.owl GENO:0000714 biolink:NamedThing qualified genomic feature A qualified sequence feature that carries sequence derived from the genome of a cell or organism. SLSO_relaxed.owl GENO:0000715 biolink:NamedThing qualified genomic feature set A set of qualified sequence features that carry genomic sequence. SLSO_relaxed.owl SO:0000110 biolink:NamedThing sequence_feature Any extent of continuous biological sequence. SLSO_relaxed.owl GENO:0000536 biolink:NamedThing genotype A specification of the genetic state of an organism, whether complete (defined over the whole genome) or incomplete (defined over a subset of the genome). Genotypes typically describe this genetic state as a diff between some variant component and a canonical reference. SLSO_relaxed.owl IAO:0000030 biolink:NamedThing information content entity A generically dependent continuant that is about some thing.|An information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity.|an information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity SLSO_relaxed.owl IAO:0000009 biolink:NamedThing datum label A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label SLSO_relaxed.owl IAO:0000027 biolink:NamedThing data item An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements. SLSO_relaxed.owl IAO:0000033 biolink:NamedThing directive information entity An information content entity whose concretizations indicate to their bearer how to realize them in a process. SLSO_relaxed.owl IAO:0000308 biolink:NamedThing figure An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something. SLSO_relaxed.owl IAO:0000310 biolink:NamedThing document A collection of information content entities intended to be understood together as a whole SLSO_relaxed.owl OBI:0001909 biolink:NamedThing conclusion based on data An information content entity that is inferred from data. SLSO_relaxed.owl OBI:0001933 biolink:NamedThing value specification An information content entity that specifies a value within a classification scheme or on a quantitative scale. SLSO_relaxed.owl OBO:RBO_00015009 biolink:NamedThing particle track The path of a particle in matter, delineated by sites where the particle deposits energy. SLSO_relaxed.owl OBO:SDDO_3000066 biolink:NamedThing product Any offered product or service. SLSO_relaxed.owl http://www.ebi.ac.uk/swo/SWO_0000002 biolink:NamedThing licence A licence is a legal instrument (usually by way of contract law, with or without printed material) governing the use or redistribution of the resource containing the licence. SLSO_relaxed.owl http://www.ebi.ac.uk/swo/SWO_9000050 biolink:NamedThing software interface The mode of interaction with a piece of software. SLSO_relaxed.owl GENO:0000659 biolink:NamedThing sequence feature set A set of sequence features. SLSO_relaxed.owl GENO:0000701 biolink:NamedThing sequence feature or set A sequence feature or a set of such features. SLSO_relaxed.owl GENO:0000713 biolink:NamedThing qualified sequence feature or collection A sequence feature (or collection of features) whose identity is dependent on the context or state of its material bearer (in addition to its sequence an position). This context/state describes factors external to its inherent sequence and position that can influences its expression, such as being targeted by gene-knockdown reagents, or an epigenetic modification. SLSO_relaxed.owl GENO:0000815 biolink:NamedThing sequence feature location The location of a sequence feature as defined by its start and end position on some reference coordinate system. SLSO_relaxed.owl GENO:0000921 biolink:NamedThing biological sequence or set A biolocical sequence, or set of such sequences. SLSO_relaxed.owl GENO:0000702 biolink:NamedThing biological sequence A linear ordering of units representing monomers of a biological macromolecule (e.g. nucleotides in DNA and RNA, amino acids in polypeptides). SLSO_relaxed.owl GENO:0000919 biolink:NamedThing qualified sequence feature A sequence feature whose identity is additionally dependent on the context or state of the material sequence molecule in which the feature is concretized. This context/state describes factors external to the feature's intrinsic sequence and position that can influences its expression, such as being targeted by gene-knockdown reagents, or an epigenetic modification. SLSO_relaxed.owl GENO:0000920 biolink:NamedThing qualified sequence feature set A set of qualified seqeunce features. SLSO_relaxed.owl GENO:0000902 biolink:NamedThing genomic feature location The location of a sequence feature in a genome, defined by its start and end position on some reference genomic coordinate system SLSO_relaxed.owl GENO:0000960 biolink:NamedThing genomic sequence A biological sequence that is of genomic origin (i.e. carries sequence from the genome of a cell or organism). SLSO_relaxed.owl GO:0003824 biolink:NamedThing catalytic activity SLSO_relaxed.owl GO:0006139 biolink:NamedThing nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. SLSO_relaxed.owl GO:0044238 biolink:NamedThing primary metabolic process The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism. SLSO_relaxed.owl GO:1901360 biolink:NamedThing organic cyclic compound metabolic process The chemical reactions and pathways involving organic cyclic compound. SLSO_relaxed.owl GO:0006259 biolink:NamedThing DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. SLSO_relaxed.owl GO:0090304 biolink:NamedThing nucleic acid metabolic process Any cellular metabolic process involving nucleic acids. SLSO_relaxed.owl GO:0006281 biolink:NamedThing DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. SLSO_relaxed.owl GO:0006974 biolink:NamedThing DNA damage response Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. SLSO_relaxed.owl GO:0006950 biolink:NamedThing response to stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). SLSO_relaxed.owl GO:0051716 biolink:NamedThing cellular response to stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell. SLSO_relaxed.owl GO:0033554 biolink:NamedThing cellular response to stress Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). SLSO_relaxed.owl GO:0016301 biolink:NamedThing kinase activity Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. SLSO_relaxed.owl GO:0016772 biolink:NamedThing transferase activity, transferring phosphorus-containing groups SLSO_relaxed.owl GO:0016740 biolink:NamedThing transferase activity SLSO_relaxed.owl OBO:RBO_00005067 biolink:NamedThing indirect cellular response to stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus which acts on another cell and not on the responding cell. The process begins with detection of the stimulus by a cell and ends with a change in state or activity of a different cell SLSO_relaxed.owl GO:0043170 biolink:NamedThing macromolecule metabolic process The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. SLSO_relaxed.owl GO:0071704 biolink:NamedThing organic substance metabolic process The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon. SLSO_relaxed.owl IAO:0000003 biolink:NamedThing measurement unit label A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure. SLSO_relaxed.owl OBI:0000963 biolink:NamedThing categorical label A label that is part of a categorical datum and that indicates the value of the data item on the categorical scale. SLSO_relaxed.owl IAO:0000005 biolink:NamedThing objective specification A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved. SLSO_relaxed.owl IAO:0000007 biolink:NamedThing action specification A directive information entity that describes an action the bearer will take. SLSO_relaxed.owl IAO:0000096 biolink:NamedThing source code module A source code module is a directive information entity that specifies, using a programming language, some algorithm. SLSO_relaxed.owl IAO:0000098 biolink:NamedThing data format specification A data format specification is the information content borne by the document published defining the specification. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file SLSO_relaxed.owl IAO:0000104 biolink:NamedThing plan specification A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.|A directive information entity with action specifications and objective specifications as parts, and that may be concretized as a realizable entity that, if realized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified. SLSO_relaxed.owl OBO:SDDO_3000087 biolink:NamedThing instrument operating mode An identified configuration for an instrument. SLSO_relaxed.owl http://www.ebi.ac.uk/swo/SWO_0000001 biolink:NamedThing software Computer software, or generally just software, is any set of machine-readable instructions (most often in the form of a computer program) that conform to a given syntax (sometimes referred to as a language) that is interpretable by a given processor and that directs a computer's processor to perform specific operations. SLSO_relaxed.owl IAO:0000010 biolink:NamedThing software Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit. SLSO_relaxed.owl IAO:0000064 biolink:NamedThing algorithm A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata. SLSO_relaxed.owl OBO:OBIB_0000701 biolink:NamedThing survey plan specification A plan specification that is realized by process of gathering information (e.g. by asking questions). SLSO_relaxed.owl OBI:0000272 biolink:NamedThing protocol A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process. SLSO_relaxed.owl OBI:0500000 biolink:NamedThing study design A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution. SLSO_relaxed.owl OBO:RBO_00005016 biolink:NamedThing radiation fractionation protocol A protocol for administering a total radiation dose in two or more increments separated by a specified time interval SLSO_relaxed.owl OBO:RBO_010000 biolink:NamedThing as low as reasonably achievable A principle of radiation protection philosophy that requires that exposures to ionizing radiation be kept as low as reasonably achievable, economic and social factors being taken into account. The protection from radiation exposure is ALARA when the expen SLSO_relaxed.owl IAO:0000015 biolink:NamedThing information carrier A quality of an information bearer that imparts the information content SLSO_relaxed.owl OBO:SLSO_0000053 biolink:NamedThing research area Indicates the scientific area addressed by the study. This clas is maintained by NASA Life Sciences Data Archive. SLSO_relaxed.owl IAO:0000032 biolink:NamedThing scalar measurement datum A scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label. SLSO_relaxed.owl IAO:0000109 biolink:NamedThing measurement datum A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device. SLSO_relaxed.owl OBI:0000984 biolink:NamedThing dose A measurement datum that measures the quantity of something that may be administered to an organism or that an organism may be exposed to. Quantities of nutrients, drugs, vaccines and toxins are referred to as doses. SLSO_relaxed.owl OBO:RBO_00000029 biolink:NamedThing dose rate The measurement datum representing a dose to an organism or object per unit time. SLSO_relaxed.owl OBO:RBO_010010 biolink:NamedThing fluence The number of particles or photons per unit of cross-sectional area perpendicular to the direction of the particle (units of m^2 or cm^2) (i.e., particles-m^[-2] or particles-cm^[-2]). SLSO_relaxed.owl OBO:RBO_010011 biolink:NamedThing flux The quotient of dN by dt, where dN is the increment of the particle number in the time interval dt. The unit for flux is reciprocal second (s^[-1].) SLSO_relaxed.owl OBO:RBO_010013 biolink:NamedThing linear energy transfer The energy deposited by an ionizing charged particle or photon in any medium per unit path length. SLSO_relaxed.owl OBO:RBO_010019 biolink:NamedThing relative biological effectiveness Factor used to compare the biological effectiveness of absorbed doses from different types of ionizing radiation, determined experimentally. RBE is the ratio of the absorbed dose of a reference radiation to the absorbed dose of the radiation in question r SLSO_relaxed.owl IAO:0000037 biolink:NamedThing dot plot A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions. SLSO_relaxed.owl IAO:0000038 biolink:NamedThing graph A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way. SLSO_relaxed.owl IAO:0000179 biolink:NamedThing histogram A histogram is a report graph which is a statistical description of a distribution in terms of occurrence frequencies of different event classes. SLSO_relaxed.owl IAO:0000180 biolink:NamedThing heatmap A heatmap is a report graph which is a graphical representation of data where the values taken by a variable(s) are shown as colors in a two-dimensional map. SLSO_relaxed.owl IAO:0000183 biolink:NamedThing dendrogram A dendrogram is a report graph which is a tree diagram frequently used to illustrate the arrangement of the clusters produced by a clustering algorithm. SLSO_relaxed.owl IAO:0000184 biolink:NamedThing scatter plot A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis. SLSO_relaxed.owl IAO:0000309 biolink:NamedThing diagram A figure that expresses one or more propositions SLSO_relaxed.owl IAO:0000078 biolink:NamedThing curation status specification The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. SLSO_relaxed.owl IAO:0000102 biolink:NamedThing data about an ontology part Data about an ontology part is a data item about a part of an ontology, for example a term SLSO_relaxed.owl IAO:0000225 biolink:NamedThing obsolescence reason specification The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. SLSO_relaxed.owl IAO:0000409 biolink:NamedThing denotator type A denotator type indicates how a term should be interpreted from an ontological perspective. SLSO_relaxed.owl IAO:0000100 biolink:NamedThing data set A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets. SLSO_relaxed.owl OBO:OBIB_0000667 biolink:NamedThing survey data A data item that contains the outcome of a survey. SLSO_relaxed.owl OBO:SDDO_3000110 biolink:NamedThing data element A data element is any characteristic that can help in understanding data content. That is, a data element is any parameter or variable that is useful, or critical, when identifying or describing the content of a data object. SLSO_relaxed.owl OBO:SLSO_0000035 biolink:NamedThing dataset file A set of related data (either written or electronic) and is a part of a dataset SLSO_relaxed.owl IAO:0000101 biolink:NamedThing image An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface. SLSO_relaxed.owl IAO:0000408 biolink:NamedThing length measurement datum A scalar measurement datum that is the result of measurement of length quality SLSO_relaxed.owl NCBITaxon:10239 biolink:NamedThing Viruses SLSO_relaxed.owl OBI:0100026 biolink:NamedThing organism A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. SLSO_relaxed.owl NCBITaxon:2 biolink:NamedThing Bacteria SLSO_relaxed.owl NCBITaxon:2157 biolink:NamedThing Archaea SLSO_relaxed.owl NCBITaxon:2759 biolink:NamedThing Eukaryota SLSO_relaxed.owl OBO:SDDO_3000065 biolink:NamedThing organism The quality of a living subject that indicates the taxonomical grouping of the subject. This grouping can be at any level in a hierachy of organism classification, or a collection of levels, and can be using scientific language or colloquial language. SLSO_relaxed.owl NCBITaxon:117570 biolink:NamedThing Teleostomi SLSO_relaxed.owl NCBITaxon:7776 biolink:NamedThing Gnathostomata SLSO_relaxed.owl NCBITaxon:117571 biolink:NamedThing Euteleostomi SLSO_relaxed.owl NCBITaxon:131567 biolink:NamedThing cellular organisms SLSO_relaxed.owl NCBITaxon:1338369 biolink:NamedThing Dipnotetrapodomorpha SLSO_relaxed.owl NCBITaxon:8287 biolink:NamedThing Sarcopterygii SLSO_relaxed.owl NCBITaxon:1437010 biolink:NamedThing Boreoeutheria SLSO_relaxed.owl NCBITaxon:9347 biolink:NamedThing Eutheria SLSO_relaxed.owl NCBITaxon:207598 biolink:NamedThing Homininae SLSO_relaxed.owl NCBITaxon:9604 biolink:NamedThing Hominidae SLSO_relaxed.owl NCBITaxon:314146 biolink:NamedThing Euarchontoglires SLSO_relaxed.owl NCBITaxon:314293 biolink:NamedThing Simiiformes SLSO_relaxed.owl NCBITaxon:376913 biolink:NamedThing Haplorrhini SLSO_relaxed.owl NCBITaxon:314295 biolink:NamedThing Hominoidea SLSO_relaxed.owl NCBITaxon:9526 biolink:NamedThing Catarrhini SLSO_relaxed.owl NCBITaxon:32523 biolink:NamedThing Tetrapoda SLSO_relaxed.owl NCBITaxon:32524 biolink:NamedThing Amniota SLSO_relaxed.owl NCBITaxon:32525 biolink:NamedThing Theria SLSO_relaxed.owl NCBITaxon:40674 biolink:NamedThing Mammalia SLSO_relaxed.owl NCBITaxon:33090 biolink:NamedThing Viridiplantae SLSO_relaxed.owl NCBITaxon:33154 biolink:NamedThing Opisthokonta SLSO_relaxed.owl NCBITaxon:33208 biolink:NamedThing Metazoa SLSO_relaxed.owl NCBITaxon:33213 biolink:NamedThing Bilateria SLSO_relaxed.owl NCBITaxon:6072 biolink:NamedThing Eumetazoa SLSO_relaxed.owl NCBITaxon:33511 biolink:NamedThing Deuterostomia SLSO_relaxed.owl NCBITaxon:9443 biolink:NamedThing Primates SLSO_relaxed.owl NCBITaxon:7711 biolink:NamedThing Chordata SLSO_relaxed.owl NCBITaxon:7742 biolink:NamedThing Vertebrata SLSO_relaxed.owl NCBITaxon:89593 biolink:NamedThing Craniata SLSO_relaxed.owl NCBITaxon:9605 biolink:NamedThing Homo SLSO_relaxed.owl NCBITaxon:9606 biolink:NamedThing Homo sapiens SLSO_relaxed.owl OBO:OBIB_0000087 biolink:NamedThing autolysis value specification A categorical value specification that is used to record the destruction of an organism cells or tissues by the organisms' own enzymes or processes with nominal categories ranging from none to severe. SLSO_relaxed.owl OBI:0001930 biolink:NamedThing categorical value specification A value specification that is specifies one category out of a fixed number of nominal categories SLSO_relaxed.owl OBI:0002205 biolink:NamedThing histologic grade according to AJCC 7th edition A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the American Joint Committee on Cancer (AJCC) 7th Edition grading system. SLSO_relaxed.owl OBI:0002210 biolink:NamedThing histologic grade according to the Fuhrman Nuclear Grading System A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the Fuhrman Nuclear Grading System. SLSO_relaxed.owl OBI:0002215 biolink:NamedThing histologic grade for ovarian tumor A categorical value specification that is a histologic grade assigned to a ovarian tumor. SLSO_relaxed.owl OBI:0002224 biolink:NamedThing pathologic primary tumor stage for colon and rectum according to AJCC 7th edition A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. SLSO_relaxed.owl OBI:0002232 biolink:NamedThing pathologic primary tumor stage for lung according to AJCC 7th edition A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. SLSO_relaxed.owl OBI:0002243 biolink:NamedThing pathologic primary tumor stage for kidney according to AJCC 7th edition A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. SLSO_relaxed.owl OBI:0002256 biolink:NamedThing pathologic primary tumor stage for ovary according to AJCC 7th edition A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. SLSO_relaxed.owl OBI:0002270 biolink:NamedThing pathologic lymph node stage for colon and rectum according to AJCC 7th edition A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes. SLSO_relaxed.owl OBI:0002279 biolink:NamedThing pathologic lymph node stage for lung according to AJCC 7th edition A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes. SLSO_relaxed.owl OBI:0002284 biolink:NamedThing pathologic lymph node stage for kidney according to AJCC 7th edition A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes. SLSO_relaxed.owl OBI:0002287 biolink:NamedThing pathologic lymph node stage for ovary according to AJCC 7th edition A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes. SLSO_relaxed.owl OBI:0002290 biolink:NamedThing pathologic distant metastases stage for colon according to AJCC 7th edition A categorical value specification that is a pathologic finding about one or more characteristics of colon cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. SLSO_relaxed.owl OBI:0002298 biolink:NamedThing pathologic distant metastases stage for lung according to AJCC 7th edition A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. SLSO_relaxed.owl OBI:0002306 biolink:NamedThing pathologic distant metastases stage for kidney according to AJCC 7th edition A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. SLSO_relaxed.owl OBI:0002310 biolink:NamedThing pathologic distant metastases stage for ovary according to AJCC 7th edition A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. SLSO_relaxed.owl OBI:0002314 biolink:NamedThing clinical tumor stage group according to AJCC 7th edition A categorical value specification that is an assessment of the stage of a cancer according to the American Joint Committee on Cancer (AJCC) v7 staging systems. SLSO_relaxed.owl OBI:0002326 biolink:NamedThing International Federation of Gynecology and Obstetrics cervical cancer stage value specification A categorical value specification that is an assessment of the stage of a gynecologic cancer according to the International Federation of Gynecology and Obstetrics (FIGO) staging systems. SLSO_relaxed.owl OBI:0002341 biolink:NamedThing International Federation of Gynecology and Obstetrics ovarian cancer stage value specification A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the FIGO classification system. SLSO_relaxed.owl OBI:0002356 biolink:NamedThing performance status value specification A categorical value specification that is an assessment of a participant's performance status (general well-being and activities of daily life). SLSO_relaxed.owl OBO:OBIB_0000726 biolink:NamedThing normal specimen A specimen that is normal. SLSO_relaxed.owl OBI:0000953 biolink:NamedThing processed specimen A specimen that has been intentionally physically modified. SLSO_relaxed.owl OBI:0001479 biolink:NamedThing specimen from organism A specimen that derives from an anatomical part or substance arising from an organism. Examples of tissue specimen include tissue, organ, physiological system, blood, or body location (arm). SLSO_relaxed.owl OBO:SDDO_3000078 biolink:NamedThing specimen A part of a feature, taken to demonstrate or to determine the character of the whole. SLSO_relaxed.owl OBO:OBIB_0000728 biolink:NamedThing specimen donor A Homo sapiens who contributes specimen. SLSO_relaxed.owl OBO:SLSO_0000031 biolink:NamedThing personnel Persons employed in any field. SLSO_relaxed.owl OBI:0000014 biolink:NamedThing regulator role a regulatory role involved with making and/or enforcing relevant legislation and governmental orders SLSO_relaxed.owl OBI:0000018 biolink:NamedThing material supplier role a role realized through the process of supplying materials such as animal subjects, reagents or other materials used in an investigation. SLSO_relaxed.owl OBI:0000947 biolink:NamedThing service provider role is a role which inheres in a person or organization and is realized in in a planned process which provides access to training, materials or execution of protocols for an organization or person SLSO_relaxed.owl OBI:0000023 biolink:NamedThing classified data set A data set that is produced as the output of a class prediction data transformation and consists of a data set with assigned class labels. SLSO_relaxed.owl OBI:0000648 biolink:NamedThing clustered data set A data set that is produced as the output of a class discovery data transformation and consists of a data set with assigned discovered class labels. SLSO_relaxed.owl OBO:SLSO_0000021 biolink:NamedThing space life sciences dataset A data product that is an aggregate of data items of the same type that have something in common. Averages and distributions can be determined for data sets. SLSO_relaxed.owl OBI:0000102 biolink:NamedThing responsible party role a study personnel role played by a party who is accountable for the execution of a study component and can make decisions about the conduct of the study SLSO_relaxed.owl OBI:0000103 biolink:NamedThing principal investigator role a responsible party role played by a person responsible for the overall conduct of a study SLSO_relaxed.owl OBI:0000112 biolink:NamedThing specimen role a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation SLSO_relaxed.owl OBI:0000571 biolink:NamedThing manufacturer role Manufacturer role is a role which inheres in a person or organization and which is realized by a manufacturing process. SLSO_relaxed.owl OBI:0000367 biolink:NamedThing light emission function A light emission function is an excitation function to excite a material to a specific excitation state that it emits light. SLSO_relaxed.owl OBI:0000374 biolink:NamedThing excitation function A excitation function is a function to inject energy by bombarding a material with energetic particles (e.g., photons) thereby imbuing internal material components such as electrons with additional energy. These internal, 'excited' particles may lead to the rupturing of covalent chemical bonds or may quickly relax back to there unexcited state with an exponential time course thereby locally emitting energy in the form of photons. SLSO_relaxed.owl OBI:0000450 biolink:NamedThing regulatory agency A regulatory agency is a organization that has responsibility over or for the legislation (acts and regulations) for a given sector of the government. SLSO_relaxed.owl OBO:SLSO_0000047 biolink:NamedThing institution NCIt Definition: An established society, corporation, foundation or other organization founded and united for a specific purpose, e.g. for health-related research; also used to refer to a building or buildings occupied or used by such organization. CDISC Definition: An established society, corporation, foundation or other organization founded and united for a specific purpose, e.g. for health-related research; also used to refer to a building or buildings occupied or used by such organization. MGED Definition: A contacts affiliation, e.g. university, research institute or business. SLSO_relaxed.owl OBI:0000456 biolink:NamedThing material transformation objective an objective specifiction that creates an specific output object from input materials. SLSO_relaxed.owl OBI:0000684 biolink:NamedThing specimen collection objective A objective specification to obtain a material entity for potential use as an input during an investigation. SLSO_relaxed.owl OBI:0200166 biolink:NamedThing data transformation objective An objective specification to transformation input data into output data SLSO_relaxed.owl OBI:0000457 biolink:NamedThing manufacturing Manufacturing is a process with the intent to produce a processed material which will have a function for future use. A person or organization (having manufacturer role) is a participant in this process SLSO_relaxed.owl OBI:0302889 biolink:NamedThing planned irradiation A planned process by which a material entity is exposed to radiative energy, which could be ionizing radiation (such as gamma rays, X-rays, charged particles or neutrons) or non-ionizing radiation (such as UV light or microwaves) SLSO_relaxed.owl OBI:0000458 biolink:NamedThing manufacturing objective is the objective to manufacture a material of a certain function (device) SLSO_relaxed.owl OBI:0000663 biolink:NamedThing class prediction data transformation A class prediction data transformation (sometimes called supervised classification) is a data transformation that has objective class prediction. SLSO_relaxed.owl OBI:0000707 biolink:NamedThing decision tree building data transformation A decision tree building data transformation is a data transformation that has objective decision tree induction. SLSO_relaxed.owl OBI:0000726 biolink:NamedThing peak matching Peak matching is a data transformation performed on a dataset of a graph of ordered data points (e.g. a spectrum) with the objective of pattern matching local maxima above a noise threshold SLSO_relaxed.owl OBI:0200171 biolink:NamedThing partitioning data transformation A partitioning data transformation is a data transformation that has objective partitioning. SLSO_relaxed.owl OBI:0200175 biolink:NamedThing class discovery data transformation A class discovery data transformation (sometimes called unsupervised classification) is a data transformation that has objective class discovery. SLSO_relaxed.owl OBI:0000700 biolink:NamedThing support vector machine A support vector machine is a data transformation with a class prediction objective based on the construction of a separating hyperplane that maximizes the margin between two data sets of vectors in n-dimensional space. SLSO_relaxed.owl OBI:0000704 biolink:NamedThing decision tree induction objective A decision tree induction objective is a data transformation objective in which a tree-like graph of edges and nodes is created and from which the selection of each branch requires that some type of logical decision is made. SLSO_relaxed.owl OBI:0200172 biolink:NamedThing partitioning objective A partitioning objective is a data transformation objective where the aim is to generate a collection of disjoint non-empty subsets whose union equals a non-empty input set. SLSO_relaxed.owl OBI:0200178 biolink:NamedThing class discovery objective A class discovery objective (sometimes called unsupervised classification) is a data transformation objective where the aim is to organize input data (typically vectors of attributes) into classes, where the number of classes and their specifications are not known a priori. Depending on usage, the class assignment can be definite or probabilistic. SLSO_relaxed.owl OBI:0200179 biolink:NamedThing class prediction objective A class prediction objective (sometimes called supervised classification) is a data transformation objective where the aim is to create a predictor from training data through a machine learning technique. The training data consist of pairs of objects (typically vectors of attributes) and class labels for these objects. The resulting predictor can be used to attach class labels to any valid novel input object. Depending on usage, the prediction can be definite or probabilistic. A classification is learned from the training data and can then be tested on test data. SLSO_relaxed.owl OBI:0000713 biolink:NamedThing GenePattern software a software that provides access to more than 100 tools for gene expression analysis, proteomics, SNP analysis and common data processing tasks. SLSO_relaxed.owl OBO:SDDO_3000113 biolink:NamedThing firmware Software that provides the low-level control for a device's specific hardware. SLSO_relaxed.owl OBI:0000727 biolink:NamedThing k-nearest neighbors A k-nearest neighbors is a data transformation which achieves a class discovery or partitioning objective, in which an input data object with vector y is assigned to a class label based upon the k closest training data set points to y; where k is the largest value that class label is assigned. SLSO_relaxed.owl OBI:0200041 biolink:NamedThing k-means clustering A k-means clustering is a data transformation which achieves a class discovery or partitioning objective, which takes as input a collection of objects (represented as points in multidimensional space) and which partitions them into a specified number k of clusters. The algorithm attempts to find the centers of natural clusters in the data. The most common form of the algorithm starts by partitioning the input points into k initial sets, either at random or using some heuristic data. It then calculates the mean point, or centroid, of each set. It constructs a new partition by associating each point with the closest centroid. Then the centroids are recalculated for the new clusters, and the algorithm repeated by alternate applications of these two steps until convergence, which is obtained when the points no longer switch clusters (or alternatively centroids are no longer changed). SLSO_relaxed.owl OBI:0200042 biolink:NamedThing hierarchical clustering A hierarchical clustering is a data transformation which achieves a class discovery objective, which takes as input data item and builds a hierarchy of clusters. The traditional representation of this hierarchy is a tree (visualized by a dendrogram), with the individual input objects at one end (leaves) and a single cluster containing every object at the other (root). SLSO_relaxed.owl OBI:0200050 biolink:NamedThing dimensionality reduction A dimensionality reduction is data partitioning which transforms each input m-dimensional vector (x_1, x_2, ..., x_m) into an output n-dimensional vector (y_1, y_2, ..., y_n), where n is smaller than m. SLSO_relaxed.owl OBI:0000792 biolink:NamedThing statistical model validation A data transformation which assesses how the results of a statistical analysis will generalize to an independent data set. SLSO_relaxed.owl OBI:0000749 biolink:NamedThing CART A CART (classification and regression trees) is a data transformation method for producing a classification or regression model with a tree-based structure. SLSO_relaxed.owl OBI:0001000 biolink:NamedThing questionnaire A document with a set of printed or written questions with a choice of answers, devised for the purposes of a survey or statistical study. SLSO_relaxed.owl OBO:SDDO_3000109 biolink:NamedThing document A written or printed paper that bears the original, official, or legal form of something and can be used to furnish decisive evidence or information. SLSO_relaxed.owl OBI:0001931 biolink:NamedThing scalar value specification A value specification that consists of two parts: a numeral and a unit label SLSO_relaxed.owl OBI:0002216 biolink:NamedThing histologic grade for ovarian tumor according to a two-tier grading system A histologic grade for ovarian tumor that is from a two-tier histological classification of tumors. SLSO_relaxed.owl OBI:0002219 biolink:NamedThing histologic grade for ovarian tumor according to the World Health Organization A histologic grade for ovarian tumor that is from a histological classification by the World Health Organization (WHO). SLSO_relaxed.owl OBI:0002357 biolink:NamedThing Eastern Cooperative Oncology Group score value specification A performance status value specification designed by the Eastern Cooperative Oncology Group to assess disease progression and its affect on the daily living abilities of the patient. SLSO_relaxed.owl OBI:0002363 biolink:NamedThing Karnofsky score vaue specification A performance status value specification designed for classifying patients 16 years of age or older by their functional impairment. SLSO_relaxed.owl OBI:0002983 biolink:NamedThing altitude measurement datum A length measurement datum between a point at sea or ground level and some point above it. SLSO_relaxed.owl OBI:0200033 biolink:NamedThing leave one out cross validation method is a data transformation : leave-one-out cross-validation (LOOCV) involves using a single observation from the original sample as the validation data, and the remaining observations as the training data. This is repeated such that each observation in the sample is used once as the validation data SLSO_relaxed.owl OBI:0200051 biolink:NamedThing principal components analysis dimensionality reduction A principal components analysis dimensionality reduction is a dimensionality reduction achieved by applying principal components analysis and by keeping low-order principal components and excluding higher-order ones. SLSO_relaxed.owl OBI:0200188 biolink:NamedThing cross validation objective A cross validation objective is a data transformation objective in which the aim is to partition a sample of data into subsets such that the analysis is initially performed on a single subset, while the other subset(s) are retained for subsequent use in confirming and validating the initial analysis. SLSO_relaxed.owl OBI:0200190 biolink:NamedThing clustered data visualization A data visualization which has input of a clustered data set and produces an output of a report graph which is capable of rendering data of this type. SLSO_relaxed.owl OBI:0400065 biolink:NamedThing light source A light source is an optical subsystem that provides light for use in a distant area using a delivery system (e.g., fiber optics). Light sources may include one of a variety of lamps (e.g., xenon, halogen, mercury). Most light sources are operated from line power, but some may be powered from batteries. They are mostly used in endoscopic, microscopic, and other examination and/or in surgical procedures. The light source is part of the optical subsystem. In a flow cytometer the light source directs high intensity light at particles at the interrogation point. The light source in a flow cytometer is usually a laser. SLSO_relaxed.owl OBO:OMRSE_00000023 biolink:NamedThing collection of humans An object aggregate all of whose components are human beings. SLSO_relaxed.owl PCO:0000018 biolink:NamedThing single-species collection of organisms A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species. SLSO_relaxed.owl PCO:0000029 biolink:NamedThing multi-species collection of organisms A collection of organisms that consists of two or more organisms from at least two species. SLSO_relaxed.owl PATO:0000011 biolink:NamedThing age A time quality inhering in a bearer by virtue of how long the bearer has existed. SLSO_relaxed.owl PATO:0000048 biolink:NamedThing hardness A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced SLSO_relaxed.owl PATO:0001546 biolink:NamedThing quality of a solid A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable. SLSO_relaxed.owl PATO:0001543 biolink:NamedThing flexibility A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking. SLSO_relaxed.owl PATO:0000052 biolink:NamedThing shape A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). SLSO_relaxed.owl PATO:0000117 biolink:NamedThing size A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. SLSO_relaxed.owl PATO:0000122 biolink:NamedThing length A 1-D extent quality which is equal to the distance between two points. SLSO_relaxed.owl PATO:0001332 biolink:NamedThing amorphous A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology. SLSO_relaxed.owl PATO:0000057 biolink:NamedThing occurrence A quality of a single process inhering in a bearer by virtue of the bearer's occurrence. SLSO_relaxed.owl PATO:0000068 biolink:NamedThing qualitative SLSO_relaxed.owl PATO:0000069 biolink:NamedThing deviation (from_normal) A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. SLSO_relaxed.owl PATO:0000169 biolink:NamedThing viability An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population. SLSO_relaxed.owl PATO:0001729 biolink:NamedThing shedability An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entity by natural process. SLSO_relaxed.owl PATO:0000308 biolink:NamedThing old An age which is relatively high. SLSO_relaxed.owl PATO:0000309 biolink:NamedThing young An age which is relatively low. SLSO_relaxed.owl PATO:0000386 biolink:NamedThing hard A hardness quality of being rigid and resistant to pressure. SLSO_relaxed.owl PATO:0001475 biolink:NamedThing increased position A position which is relatively high. SLSO_relaxed.owl PATO:0001563 biolink:NamedThing increased mass A mass which is higher than normal or average. SLSO_relaxed.owl PATO:0001657 biolink:NamedThing increased osmolarity A osmolarity which is relatively high. SLSO_relaxed.owl PATO:0001693 biolink:NamedThing increased viscosity A viscosity which relatively high. SLSO_relaxed.owl PATO:0015022 biolink:NamedThing increased combustibility An increase in combustibility. SLSO_relaxed.owl PATO:0000407 biolink:NamedThing flat A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature. SLSO_relaxed.owl PATO:0002254 biolink:NamedThing flattened A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane. SLSO_relaxed.owl PATO:0000587 biolink:NamedThing decreased size A size quality which is relatively low. SLSO_relaxed.owl PATO:0001476 biolink:NamedThing decreased position A positional which is relatively low. SLSO_relaxed.owl PATO:0000689 biolink:NamedThing continuous A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. SLSO_relaxed.owl PATO:0000957 biolink:NamedThing opacity An optical quality which obtains by virtue of the ability of the bearer to absorb visible light. SLSO_relaxed.owl PATO:0001300 biolink:NamedThing optical quality An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light. SLSO_relaxed.owl PATO:0000963 biolink:NamedThing opaque A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. SLSO_relaxed.owl PATO:0000992 biolink:NamedThing viscosity A physical quality of a fluid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow. SLSO_relaxed.owl PATO:0001548 biolink:NamedThing quality of a liquid A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape. SLSO_relaxed.owl PATO:0000998 biolink:NamedThing viscous A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity. SLSO_relaxed.owl PATO:0001154 biolink:NamedThing elongated A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. SLSO_relaxed.owl PATO:0001199 biolink:NamedThing linear A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel. SLSO_relaxed.owl PATO:0001481 biolink:NamedThing sloped A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction. SLSO_relaxed.owl PATO:0001591 biolink:NamedThing curvature A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending. SLSO_relaxed.owl PATO:0001291 biolink:NamedThing electromagnetic (EM) radiation quality A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation. SLSO_relaxed.owl PATO:0070060 biolink:NamedThing quality of interaction of a substance with electromagnetic radiation A quality of a substance on which or through which electromagnetic radiation impinges or traverses with respect to radiation. This substance quality changes the quality of the incident radiation with respect to any of: intensity, direction, scatter and wavelength. SLSO_relaxed.owl PATO:0001422 biolink:NamedThing dead A viability quality inhering in a bearer by virtue of the cessation of the bearer's life. SLSO_relaxed.owl PATO:0001429 biolink:NamedThing acidic An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions. SLSO_relaxed.owl PATO:0001687 biolink:NamedThing elevation A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface. SLSO_relaxed.owl PATO:0002181 biolink:NamedThing displaced A positional quality inhering in a bearer by virtue the bearer's being changed in position. SLSO_relaxed.owl PATO:0001545 biolink:NamedThing inflexible A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. SLSO_relaxed.owl PATO:0001547 biolink:NamedThing quality of a gas A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape. SLSO_relaxed.owl PATO:0001688 biolink:NamedThing increased elevation An elevation which is relatively high. SLSO_relaxed.owl PATO:0001689 biolink:NamedThing decreased elevation An elevation which is relatively low. SLSO_relaxed.owl PATO:0001731 biolink:NamedThing deciduous (plant) A quality inhering in a plant by virtue of the bearer's disposition to shed foliage. SLSO_relaxed.owl PATO:0001733 biolink:NamedThing evergreen (plant) A quality inhering in a plant by virtue of the bearer's disposition to retain foliage. SLSO_relaxed.owl PATO:0002352 biolink:NamedThing herbaceous A quality inhering in a bearer by virtue of the bearer's upper parts die back to the rootstock at the end of the growing season. SLSO_relaxed.owl PATO:0002143 biolink:NamedThing sloped downward SLSO_relaxed.owl PATO:0002253 biolink:NamedThing platelike A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge. SLSO_relaxed.owl PATO:0002300 biolink:NamedThing increased quality A quality that has a value that is increased compared to normal or average. SLSO_relaxed.owl PATO:0002301 biolink:NamedThing decreased quality A quality that has a value that is decreased compared to normal or average. SLSO_relaxed.owl PCO:0000001 biolink:NamedThing population of organisms A collection of organisms, all of the same species, that live in the same place. SLSO_relaxed.owl OBO:CARO_0001010 biolink:NamedThing SLSO_relaxed.owl PCO:0000002 biolink:NamedThing ecological community A multi-species collection of organisms of at least two different species, living in a particular area. Must have at least two populations of different species as members. SLSO_relaxed.owl PO:0009011 biolink:NamedThing plant structure A plant anatomical entity (PO:0025131) that is, or was, part of a plant, or was derived from a part of a plant. SLSO_relaxed.owl PO:0009002 biolink:NamedThing plant cell A cell which is a plant structure (PO:0009011). SLSO_relaxed.owl PO:0009007 biolink:NamedThing portion of plant tissue A plant structure (PO:0009011) that consists predominantly of similarly specialized plant cells (PO:0009002) of one or more types. SLSO_relaxed.owl PO:0025496 biolink:NamedThing multi-tissue plant structure A plant structure (PO:0009011) that has as parts two or more portions of plant tissue (PO:0009007) of at least two different types and which through specific morphogenetic processes forms a single structural unit demarcated by primarily bona-fide boundaries from other structural units of different types. SLSO_relaxed.owl PO:0025497 biolink:NamedThing collective plant structure A plant structure (PO:0009011) that is a proper part of a whole plant (PO:0000003) and includes two or more adjacent plant organs (PO:0009008) or adjacent cardinal organ parts (PO:0025001), along with any associated portions of plant tissue (PO:0009007). SLSO_relaxed.owl PO:0000037 biolink:NamedThing shoot axis apex A shoot axis (PO:0025029) that is the most distal part of a shoot system (PO:0009006) and has as parts a shoot apical meristem (PO:0020148) and the youngest primordia (PO:0025127). SLSO_relaxed.owl PO:0025029 biolink:NamedThing shoot axis A plant axis (PO:0025004) that is part of a shoot system (PO:0009006). SLSO_relaxed.owl PO:0000225 biolink:NamedThing peripheral zone A portion of meristem tissue (PO:0009013) which is the organogenic region of the meristem, characterized by higher rates of cell division. SLSO_relaxed.owl PO:0009013 biolink:NamedThing portion of meristem tissue A portion of plant tissue (PO:0009007) in which plant cells (PO:0009002) have retained their embryonic characteristics, or have reverted to them secondarily, and that divide to produce new cells that can undergo differentiation to form mature tissues, i.e. they have a capacity for morphogenesis and growth. SLSO_relaxed.owl PO:0006079 biolink:NamedThing shoot system meristem A portion of meristem tissue (PO:0009013) that is part of a shoot system (PO:0009006). SLSO_relaxed.owl PO:0006210 biolink:NamedThing protoderm A portion of meristem tissue (PO:0009013) that is the outer layer of an apical meristem (PO:0020144), or the outer layer of a plant embryo proper (PO:0000001), and gives rise to a portion of epidermis (PO:0005679). SLSO_relaxed.owl PO:0020144 biolink:NamedThing apical meristem A maximal portion of meristem tissue (PO:0009013) located at a shoot apex (PO:0000037) or root tip (PO:0000025). SLSO_relaxed.owl PO:0025127 biolink:NamedThing primordium A portion of meristem tissue (PO:0009013) that has as parts protoderm (PO:0006210) and sub-epidermal meristematic tissue and is committed to the development of a particular plant structure (PO:0009011). SLSO_relaxed.owl PO:0025430 biolink:NamedThing phyllome anlagen A portion of meristem tissue (PO:0009013) that is part of a peripheral zone (PO:0000225) of a shoot apical meristem (PO:0020148) and will give rise to a phyllome primordium (PO:0025128). SLSO_relaxed.owl PO:0025433 biolink:NamedThing root anlagen A portion of meristem tissue (PO:0009013) that is committed to the development of a root primordium (PO:0005029). SLSO_relaxed.owl PO:0004010 biolink:NamedThing meristematic cell A native plant cell (PO:0025606) synthesizing protoplasm and producing new cells by division and with only a primary cell wall. SLSO_relaxed.owl PO:0025606 biolink:NamedThing native plant cell A plant cell (PO:0009002) that is either part of a multicellular whole plant (PO:0000003) 'in vivo' or a unicellular organism 'in natura' (i.e. part of a natural environment). SLSO_relaxed.owl PO:0005029 biolink:NamedThing root primordium A primordium (PO:0025127) that develops from a root anlagen (PO:0025433) and is committed to the development of a root (PO:0009005). SLSO_relaxed.owl PO:0025128 biolink:NamedThing phyllome primordium A primordium (PO:0025127) that develops from a phyllome anlagen (PO:0025430) and is part of a shoot apex (PO:0000037) and is committed to the development of a phyllome (PO:0006001). SLSO_relaxed.owl PO:0006001 biolink:NamedThing phyllome A lateral plant organ (PO:0009008) produced by a shoot apical meristem (PO:0020148). SLSO_relaxed.owl PO:0009008 biolink:NamedThing plant organ A multi-tissue plant structure (PO:0025496) that is a functional unit, is a proper part of a whole plant (PO:0000003), and includes portions of plant tissue (PO:0009007) of at least two different types that derive from a common developmental path. SLSO_relaxed.owl PO:0025004 biolink:NamedThing plant axis An axial plant organ (PO:0009008). SLSO_relaxed.owl PO:0009012 biolink:NamedThing plant structure development stage A stage in the life of a plant structure (PO:0009011) during which the plant structure undergoes developmental processes. SLSO_relaxed.owl PO:0009005 biolink:NamedThing root A plant axis (PO:0025004) that lacks shoot axis nodes (PO:0005004) and usually grows indeterminately. SLSO_relaxed.owl PO:0009006 biolink:NamedThing shoot system A collective plant organ structure (PO:0025007) that produces shoot-borne portions of meristem tissue (PO:0009013) and the plant structures (PO:0009011) that arise from them. SLSO_relaxed.owl PO:0025007 biolink:NamedThing collective plant organ structure A collective plant structure (PO:0025497) that is a proper part of a whole plant (PO:0000003), and is composed of two or more adjacent plant organs (PO:0009008) and the associated portions of plant tissue (PO:0009007). SLSO_relaxed.owl PO:0025025 biolink:NamedThing root system A collective plant organ structure (PO:0025007) that produces root meristems (PO:0006085), the plant structures (PO:0009011) that arise from them and the parts thereof. SLSO_relaxed.owl PO:0020148 biolink:NamedThing shoot apical meristem A shoot system meristem (PO:0006079) formed at the apex of the shoot axis (PO:0025029), including those originating from an axillary bud meristem (PO:0000232). SLSO_relaxed.owl PO:0025034 biolink:NamedThing leaf A phyllome (PO:0006001) that is not associated with a reproductive structure. SLSO_relaxed.owl PO:0025337 biolink:NamedThing life of whole plant stage A maximal whole plant development stage. SLSO_relaxed.owl PO:0028002 biolink:NamedThing sporophyte development stage A whole plant development stage (PO:0007033) that has as primary participant a whole plant (PO:0000003) during the interval between fertilization (or apogamy) and death. SLSO_relaxed.owl OBO:RBO_00000001 biolink:NamedThing ionizing radiation categorized by source Ionizing radiation classified by the material entity which generates or emits it. SLSO_relaxed.owl OBO:RBO_00000116 biolink:NamedThing ionizing radiation Particle or electromagnetic radiation with sufficient energy to liberate one or more electrons from an atom. SLSO_relaxed.owl OBO:RBO_00000112 biolink:NamedThing high linear energy transfer radiation Neutrons or charged particles, such as protons or alpha particles that produce ionizing events densely spaced on a molecular scale (e.g., >10 keV-micron^[-1]. SLSO_relaxed.owl OBO:RBO_00000113 biolink:NamedThing low linear energy transfer radiation X and gamma rays or light charged particles such as electrons that produce sparse ionizing events far apart on a molecular scale. SLSO_relaxed.owl OBO:RBO_00000114 biolink:NamedThing ionizing electromagnetic radiation Electromagnetic radiation having sufficient energy to remove one or more electrons from an atom SLSO_relaxed.owl OBO:RBO_00005012 biolink:NamedThing ionizing radiation energy The kinetic energy carried by a particle or photon of ionizing radiation. SLSO_relaxed.owl OBO:RBO_00000002 biolink:NamedThing space radiation Radiation originating outside the Earth's atmosphere. SLSO_relaxed.owl OBO:RBO_00000003 biolink:NamedThing ground radiation Radiation produced on Earth or on another planetary body by natural or artificial means. SLSO_relaxed.owl OBO:RBO_00000005 biolink:NamedThing Fe-56 ion radiation Atomic nuclei, each with 26 protons and 30 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00005001 biolink:NamedThing heavy ion radiation Atomic nuclei, with atomic number 2 or greater and kinetic energy imparted by natural or artificial means SLSO_relaxed.owl OBO:RBO_00000006 biolink:NamedThing C-12 ion radiation Atomic nuclei, each with 6 protons and 6 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000007 biolink:NamedThing Si-28 ion radiation Atomic nuclei, each with 14 protons and 14 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000008 biolink:NamedThing He-4 ion radiation Atomic nuclei, each with 2 protons and 2 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000009 biolink:NamedThing Ne-20 ion radiation Atomic nuclei, each with 10 protons and 10 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000125 biolink:NamedThing O-16 ion radiation Atomic nuclei, each with 8 protons and 8 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000126 biolink:NamedThing Ar-40 ion radiation Atomic nuclei, each with 18 protons and 22 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000127 biolink:NamedThing Ti-48 ion radiation Atomic nuclei, each with 22 protons and 26 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000128 biolink:NamedThing Kr-84 ion radiation Atomic nuclei, each with 36 protons and 48 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000129 biolink:NamedThing Nb-93 ion radiation Atomic nuclei, each with 41 protons and 52 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000130 biolink:NamedThing Ag-107 ion radiation Atomic nuclei, each with 47 protons and 60 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000131 biolink:NamedThing Xe-129 ion radiation Atomic nuclei, each with 54 protons and 75 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000132 biolink:NamedThing Ta-181 ion radiation Atomic nuclei, each with 73 protons and 108 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000133 biolink:NamedThing Au-197 ion radiation Atomic nuclei, each with 79 protons and 118 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000134 biolink:NamedThing N-14 ion radiation Atomic nuclei, each with 7 protons and 7 neutrons with kinetic energy imparted by natural or artificial means such as by a particle accelerator SLSO_relaxed.owl OBO:RBO_00000011 biolink:NamedThing active dosimeter A radiation measuring device which records dose at the time of detection, with data available in real time SLSO_relaxed.owl OBO:RBO_00000012 biolink:NamedThing passive dosimeter A radiation measuring device which integrates the amount of radiation to which it is exposed. Passive detectors are interrogated at a later time to determine the dose. SLSO_relaxed.owl OBO:RBO_00000013 biolink:NamedThing background ionizing radiation The amount of ionizing radiation to which a member of the population on Earth is exposed from natural sources, such as terrestrial radiation from naturally-occurring radionuclides in the soil, cosmic radiation originating in outer space, and naturally-occurring ra SLSO_relaxed.owl OBO:RBO_00000117 biolink:NamedThing charged particle radiation Charged particles with kinetic energy imparted by natural or artificial means (such as by a particle accelerator) SLSO_relaxed.owl OBO:RBO_00015001 biolink:NamedThing neutral particle radiation Uncharged particles with kinetic energy imparted by natural or artificial means (such as by a particle accelerator) SLSO_relaxed.owl OBO:RBO_00000014 biolink:NamedThing effective dose The sum of the equivalent doses to all organs in the body, each adjusted to account for the sensitivity of the organ to radiation. Effective dose is calculated for the whole body. Effective dose is expressed in millisieverts (mSv). SLSO_relaxed.owl OBO:RBO_010016 biolink:NamedThing radiation dose A measurement datum of the quantity of radiation absorbed by a substance or organism. The term "radiation dose" may for example refer to absorbed dose, organ dose, dose equivalent or equivalent dose, depending upon context and weighting factor(s). SLSO_relaxed.owl OBO:RBO_00000023 biolink:NamedThing equivalent dose The product of the mean absorbed dose in an organ or tissue and the radiation weighting factor (w_R )of the radiation type of interest SLSO_relaxed.owl OBO:RBO_00000024 biolink:NamedThing dose fraction The absorbed radiation dose administered in a single one of a series comprising a fractionated radiation exposure SLSO_relaxed.owl OBO:RBO_00005010 biolink:NamedThing absorbed radiation dose The amount of energy from any type of ionizing radiation deposited in a specified mass of any medium. SLSO_relaxed.owl OBO:RBO_00015007 biolink:NamedThing nanodosimetric measurement datum Measurement of the pattern (frequency and spatial distribution) of ionization events produced by energy deposition in time and space in a substance characterized by linear dimensions of the order of 1-100 nanometers SLSO_relaxed.owl OBO:RBO_00015008 biolink:NamedThing specific energy measurement datum In microdosimetry the specific energy, z, is the energy deposited by radiation ( in one or more deposition events) in a specified micrometric (or smaller) site divided my the mass of the site. Measured in Gy. SLSO_relaxed.owl OBO:RBO_00015013 biolink:NamedThing microdosimetric measurement datum Measurement of the pattern (frequency and spatial distribution) of ionization events produced by energy deposition in time and space in a substance characterized by linear dimensions of the order of 1-100 micrometers. SLSO_relaxed.owl OBO:RBO_010007 biolink:NamedThing dose equivalent The product of the absorbed dose (D) at a point and the quality factor (Q) at that point for the radiation type (i.e., H = DQ). The unit of H is J-kg^[-1] with the special name sievert (Sv) SLSO_relaxed.owl OBO:RBO_010014 biolink:NamedThing organ dose The mean absorbed radiation dose in a specified tissue or organ of the human body. SLSO_relaxed.owl OBO:RBO_00000015 biolink:NamedThing mixed radiation The process of exposing the same sample to more than one type and/or energy of radiation, in sequence or simultaneously. SLSO_relaxed.owl OBO:RBO_00000049 biolink:NamedThing particle accelerator radiation Radiation produced by a particle accelerator. SLSO_relaxed.owl OBO:RBO_00000017 biolink:NamedThing earth surface That part of the Earth exposed to the Earth atmosphere. SLSO_relaxed.owl OBO:RBO_00000018 biolink:NamedThing earth atmosphere The region between the Earth's surface and an altitude of approximately 100 km SLSO_relaxed.owl OBO:RBO_00005017 biolink:NamedThing cis-lunar space The region of space between the Earth and the Moon SLSO_relaxed.owl OBO:RBO_00005018 biolink:NamedThing lunar orbit A region of space defined by a regular, repeating path of a specified object about Earth's moon SLSO_relaxed.owl OBO:RBO_00005019 biolink:NamedThing lunar surface The area of the lunar landmass exposed to space SLSO_relaxed.owl OBO:RBO_00005020 biolink:NamedThing cis-mars space The region of space between the Earth and Mars SLSO_relaxed.owl OBO:RBO_00005021 biolink:NamedThing mars orbit A region of space defined by a regular, repeating path of a specified object about Mars SLSO_relaxed.owl OBO:RBO_00005022 biolink:NamedThing mars surface The area of the Mars landmass exposed to the Martian atmosphere SLSO_relaxed.owl OBO:RBO_00005023 biolink:NamedThing interplanetary space The region of space in the Solar System between planets SLSO_relaxed.owl OBO:RBO_00005024 biolink:NamedThing planet surface The outermost solid or liquid area of a planet SLSO_relaxed.owl OBO:RBO_00000019 biolink:NamedThing low earth orbit The region of outer space between the Earth's atmosphere and the innermost Earth radiation belt SLSO_relaxed.owl OBO:RBO_00000020 biolink:NamedThing beyond low earth orbit That part of outer space beyond the Earth's radiation belts. SLSO_relaxed.owl OBO:RBO_00000021 biolink:NamedThing fractionated radiation exposure A radiation dose administered in two or more exposures at specified time intervals SLSO_relaxed.owl OBO:RBO_00002001 biolink:NamedThing accidental radiation exposure Unplanned exposure to radiation of any type in any environment or otherwise planned process. SLSO_relaxed.owl OBO:RBO_00002004 biolink:NamedThing exposure to naturally ocurring radioactive material Exposure to naturally occurring radiation (NORM) of any type in any environment . SLSO_relaxed.owl OBO:RBO_00002007 biolink:NamedThing anthropogenic radiation exposure Exposure to ionising radiation created by a man-made machine or exposure to a fixed source. For example a cobalt source, an X ray machine, an acceleratororf a nucler weapon. SLSO_relaxed.owl OBO:RBO_00002119 biolink:NamedThing unplanned irradiation Irradiation that is not the result of a planned process SLSO_relaxed.owl OBO:RBO_00015017 biolink:NamedThing internal radiation exposure Exposure to an inhaled, ingested, injected or implanted source of radiation of any origin as part of a planned or accidental process. SLSO_relaxed.owl OBO:RBO_00015018 biolink:NamedThing external radiation exposure Exposure to an external source of radiation of any origin or type. SLSO_relaxed.owl OBO:RBO_00000022 biolink:NamedThing millirad A unit of absorbed dose equal to 1/1000 of a rad SLSO_relaxed.owl OBO:UO_1000135 biolink:NamedThing rad based unit SLSO_relaxed.owl OBO:UO_0000135 biolink:NamedThing rad SLSO_relaxed.owl OBO:RBO_00000026 biolink:NamedThing cosmic radiation Penetrating ionizing radiation, both particulate and electromagnetic, that originates in outer space SLSO_relaxed.owl OBO:RBO_00000027 biolink:NamedThing galactic cosmic radiation Galactic cosmic radiation consists of high-energy charged particles originating from outside the solar system SLSO_relaxed.owl OBO:RBO_00000028 biolink:NamedThing solar cosmic radiation Solar cosmic radiation is high-energy charged particles that originate from the sun. SLSO_relaxed.owl OBO:RBO_00000044 biolink:NamedThing spacecraft module a self-contained unit of a spacecraft SLSO_relaxed.owl OBO:RBO_00000046 biolink:NamedThing space station A spacecraft capable of supporting a human crew in orbit for an extended period of time. It lacks major propulsion or landing systems. Stations must have docking ports to allow other spacecraft to dock to transfer crew and supplies. SLSO_relaxed.owl OBO:RBO_00000045 biolink:NamedThing international space station module A self-contained unit of the International Space Station. SLSO_relaxed.owl OBO:RBO_00000047 biolink:NamedThing particle accelerator beamline The path leading from a particle accelerator to an experimental station used in experiments in particle physics, materials science, chemistry, and molecular biology, or in irradiation tests or to produce isotopes. SLSO_relaxed.owl OBO:RBO_00005042 biolink:NamedThing microbeam A microbeam is a narrow beam of radiation, of micrometer or sub-micrometer dimensions. Together with integrated imaging techniques, microbeams allow precisely defined quantities of damage to be introduced at precisely defined locations. SLSO_relaxed.owl OBO:RBO_00000050 biolink:NamedThing nuclear reactor radiation Radiation produced by a nuclear reactor. SLSO_relaxed.owl OBO:RBO_00000051 biolink:NamedThing cesium-137 gamma radiation High energy photons emitted during nuclear decay of the Cesium-137 isotope. SLSO_relaxed.owl OBO:RBO_00000120 biolink:NamedThing gamma radiation electromagnetic radiation with photon energies greater than approximately 100 keV SLSO_relaxed.owl OBO:RBO_00000052 biolink:NamedThing cobalt-60 gamma radiation High energy photons emitted during nuclear decay of the Cobalt-60 isotope. SLSO_relaxed.owl OBO:RBO_00000058 biolink:NamedThing cobalt-57 gamma radiation High energy photons emitted during nuclear decay of the Cobalt-57 isotope. SLSO_relaxed.owl OBO:RBO_00000061 biolink:NamedThing actinide A series of radioactive elements from ACTINIUM, atomic number 89, to and including LAWRENCIUM, atomic number 103 SLSO_relaxed.owl OBO:RBO_00000062 biolink:NamedThing actinium A trivalent radioactive element and the prototypical member of the actinide family. It has the atomic symbol Ac, and atomic number 89. Its principal isotope is 227 and it decays primarily by beta-emission. SLSO_relaxed.owl OBO:RBO_00000063 biolink:NamedThing americium A completely man-made radioactive actinide with atomic symbol Am, and atomic number 95. Its valence can range from +3 to +6. Because of its nonmagnetic ground state, it is an excellent superconductor. It is also used in bone mineral analysis and as a radiation source for radiotherapy SLSO_relaxed.owl OBO:RBO_00000064 biolink:NamedThing californium A man-made radioactive actinide with atomic symbol Cf, atomic number 98, and atomic weight 251. Its valence can be +2 or +3. Californium has medical use as a radiation source for radiotherapy SLSO_relaxed.owl OBO:RBO_00000065 biolink:NamedThing neptunium A radioactive element of the actinide metals family. It has the atomic symbol Np, and atomic number 93. SLSO_relaxed.owl OBO:RBO_00000066 biolink:NamedThing plutonium A naturally radioactive element of the actinide metals series. It has the atomic symbol Pu, and atomic number 94. Plutonium is used as a nuclear fuel, to produce radioisotopes for research, in radionuclide batteries for pacemakers, and as the agent of fission in nuclear weapons. SLSO_relaxed.owl OBO:RBO_00000067 biolink:NamedThing thorium A radioactive element of the actinide series of metals. It has an atomic symbol Th, atomic number 90, and atomic weight 232.04. It is used as fuel in nuclear reactors to produce fissionable uranium isotopes. Because of its radioopacity, various thorium compounds are used to facilitate visualization in roentgenography. SLSO_relaxed.owl OBO:RBO_00000068 biolink:NamedThing uranium A radioactive element of the actinide series of metals. It has an atomic symbol U, atomic number 92, and atomic weight 238.03. U-235 is used as the fissionable fuel in nuclear weapons and as fuel in nuclear power reactors. SLSO_relaxed.owl OBO:RBO_00000069 biolink:NamedThing ultraviolet radiation Electromagnetic radiation with photon energies approximately 3-120 eV. High energy UV radiation can be ioinizing. SLSO_relaxed.owl OBO:RBO_00005013 biolink:NamedThing x-ray radiation Electromagnetic radiation with photon energies approximately between 0.1 and 120 keV. The upper end of the x-ray spectrum overlaps with the lower end of the gamma ray spectrum. SLSO_relaxed.owl OBO:RBO_00000074 biolink:NamedThing peptide radiation response modifier Radiation response modifiers that are peptides. SLSO_relaxed.owl OBO:RBO_00000075 biolink:NamedThing small molecule radiation response modifier Radiation response modifiers that are small molecules. SLSO_relaxed.owl OBO:RBO_00000076 biolink:NamedThing nuclear industry worker A person employed or otherwise working in commercial activities where nuclear materials are created, handled or disposed and at risk of occupational radiation exposure. Excludes health workers. SLSO_relaxed.owl OBO:RBO_00000077 biolink:NamedThing astronaut SLSO_relaxed.owl OBO:RBO_00000078 biolink:NamedThing military SLSO_relaxed.owl OBO:RBO_00000079 biolink:NamedThing medical professional SLSO_relaxed.owl OBO:RBO_00000080 biolink:NamedThing dentist SLSO_relaxed.owl OBO:RBO_00000081 biolink:NamedThing radiologist SLSO_relaxed.owl OBO:RBO_00000083 biolink:NamedThing epidemiological study An epidemiological study is the study (scientific, systematic, and data-driven) of the distribution (frequency, pattern) and determinants (causes, risk factors) of health-related states and events (not just diseases) in specified populations (neighborhood, school, city, state, country, global) SLSO_relaxed.owl OBO:RBO_00000084 biolink:NamedThing environmental study A study of the impact of radiation on the composition of or processes within the natural or anthropogenic environment. SLSO_relaxed.owl OBO:RBO_00000085 biolink:NamedThing lifespan study A study who endpoint is the lifespan of the organism under investifgation. SLSO_relaxed.owl OBO:RBO_00000086 biolink:NamedThing carcinogenesis study A study of the effect of agents including radiation, seperately or together, on the incidence or type of neoplasia or pre-neoplasia. SLSO_relaxed.owl OBO:RBO_00000087 biolink:NamedThing tissue damage study A study in which the structural or processual damage to normal tissue caused by radiation is assessed. Often by histopathology or molecular profiling. SLSO_relaxed.owl OBO:RBO_00000088 biolink:NamedThing dna damage and repair study A study of the mechanism or effects of radiation on dna damage and its repair. SLSO_relaxed.owl OBO:RBO_00000089 biolink:NamedThing physiological study A study of the effects of internal or external radiation on cellular or organismal physiology. SLSO_relaxed.owl OBO:RBO_00000090 biolink:NamedThing anatomical study A study of the effects of radiation on the integrity, composition and quality of adult, fetal or embryonic anatomical structures. SLSO_relaxed.owl OBO:RBO_00000091 biolink:NamedThing external exposure study A study of the effects of external irradiation on an organism. SLSO_relaxed.owl OBO:RBO_00000092 biolink:NamedThing internal contamination study A study of the effects of internal irradiation on an organism where the radiation source is internalised within the body tissues ( eg. by injection), gastrointestinal ( eg gavage), urogenital, auditory or respiratory ( eg instillation or inhalation) systems. SLSO_relaxed.owl OBO:RBO_00000093 biolink:NamedThing mixed exposure route study A study of the effects of radiation exposure where the exposoure has an internal and external mode of application. SLSO_relaxed.owl OBO:RBO_00000100 biolink:NamedThing gene expression study A study of the effects of radiation on gene expression. SLSO_relaxed.owl OBO:RBO_00000101 biolink:NamedThing proteomics study A study of the effects of radiation on the proteome or individual proteins. SLSO_relaxed.owl OBO:RBO_00000102 biolink:NamedThing marker discovery study A study that aims at the discovery of protein, RNA or other molecular entities or modifcations that can act as reliable surrogates for the prediction or measurement of the effects of radiation or the response of the organism to radiation. SLSO_relaxed.owl OBO:RBO_00000103 biolink:NamedThing therapeutics study A study that aims at the discovery, development or assessment of efficacy of therapeutic agents or processes designed to mitigate or cure the effects of radiation exposure. SLSO_relaxed.owl OBO:RBO_00000104 biolink:NamedThing survival study A study that uses survival as an endpoint. Generally applicable to animal studies rather than human studies which would use the "lifespan" measure (RBO:00000085) SLSO_relaxed.owl OBO:RBO_00000105 biolink:NamedThing metabolomics study A study of the effects of radiation on the metabolome or individual metabolites. SLSO_relaxed.owl OBO:RBO_00000106 biolink:NamedThing nuclear accident study A study of the contributing factors consequences and prevention of nuclear accidents SLSO_relaxed.owl OBO:RBO_00000107 biolink:NamedThing toxicity study A study of the toxicity of chemical or biological agents on cells or whole organisms. SLSO_relaxed.owl OBO:RBO_00000109 biolink:NamedThing offspring study A study of the effects of radiation on the offspring of an irradiated animal or plant. SLSO_relaxed.owl OBO:RBO_00000110 biolink:NamedThing biokinetics study A study of the distribution and metabolism orf drugs or biologicals used for therapeutic purposes. SLSO_relaxed.owl OBO:RBO_00002013 biolink:NamedThing social and psychosocial study Studies relating to human society and the interrelation of social and educational factors with individual thought and behaviour including mental illness. SLSO_relaxed.owl OBO:RBO_00002015 biolink:NamedThing mass media study Studies on the distribution of information or opinion by technological means of communication that reach large numbers of people. SLSO_relaxed.owl OBO:RBO_00002016 biolink:NamedThing preparedness study Studies on the civil, legal, and political preparedness for accidental or deliberate release of radioactive materials or radiation into the environment. SLSO_relaxed.owl OBO:RBO_00002017 biolink:NamedThing clinical study Studies in which research is conducted with human subjects or on material of human origin in which the investigator directly interacts with human subjects, including the dveelopment of new technologies, understanding of the mechanisms of disease, therapy, clinical trials, epidemiology behaviousrand health services research. SLSO_relaxed.owl OBO:RBO_00002018 biolink:NamedThing legal and governance study Study of the laws, statutes, ordinances, government or international treaty regulations or authoritative guidelines, as well as for legal controversy and court decisions, relating to the regulation of radiation safety, movement and containment of radioactive materials and the consequences for human health or the natural environment of radioactive contamination. SLSO_relaxed.owl OBO:RBO_00002019 biolink:NamedThing security and law enforcement study Studies relating to organisations and processes concerned with freedom from or resilience towards potential harm caused by hostile intent or circumstances (for example terrorism and illegal release of radioactive substances or radiation) towards the natural environment or human population, and the enforcement of relevant laws and international treaties. SLSO_relaxed.owl OBO:RBO_00002020 biolink:NamedThing cancer study A study whose intention is to discover knowledge concerning the origins, nature diagnosis or therapy for neoplastic disease and cancer. This includes studies in humans, model organisms, the laboratory and in silico. This class includes experimental and epidemiological studies specifically aimed at cancer. SLSO_relaxed.owl OBO:RBO_00002022 biolink:NamedThing environmental study Studies of the presence of radiation of any type in the natural or anthropogenic environment and its impact on animals, plants, and microorganisms. This includes studies measuring nuclide transfer in the environment, and interaction with meteorological phenomena. This excludes occupational exposure and the human working environment. SLSO_relaxed.owl OBO:RBO_00002023 biolink:NamedThing nuclear industry study Studies concerned with the regulation, monitoring and operation of the nuclear industry. For example nuclear power station and reprocessing plants, isotope purification and manufactore, weapons manufacture and testing. This includes occupation health studies, impact of accidental or deliberate release on the natural or man made environment and impact on organisms specifically affected directly or indirectly by contamination. SLSO_relaxed.owl OBO:RBO_00002024 biolink:NamedThing laboratory study Research done in a laboratory. A laboratory study may use special equipment and cells or animals to investigate the effects of an experimental perturbation, discover fundamental molecular mechanisms, assay biological substances, or find out if a drug, procedure, or treatment is likely to be useful in humans. A laboratory investigation is often characterised by a hypothesis and is carried out with controls. SLSO_relaxed.owl OBO:RBO_00005026 biolink:NamedThing ground analog study A study at a ground facility designed so as to replicate one or more conditions in space (e.g. radiation, microgravity, isolation) SLSO_relaxed.owl OBO:RBO_00005027 biolink:NamedThing ground control study An study at a ground facility designed so as to replicate conditions in space (e.g. radiation, microgravity, isolation) with the exception of one condition, so as to ascertain the effects of that condition on an organism or instrument SLSO_relaxed.owl OBO:RBO_00005037 biolink:NamedThing adaptive radiation response study A study of a response to radiation conditioned by prior administration of radiation of a different type and/or at a different dose or dose rate SLSO_relaxed.owl OBO:RBO_00015023 biolink:NamedThing mixed irradiation study A mixed irradiation study typically involves exposing a sample or system to a combination of different types of radiation. This could include exposure to various forms of ionizing radiation, such as gamma rays, X-rays, and particle radiation. Exposure might be simultaneous or sequential and from anthropogenic or natural sources of radiation. The goal is to understand how the different types of radiation interact with each other and their combined effects on the material or biological system under investigation. SLSO_relaxed.owl OBO:RBO_00000094 biolink:NamedThing acute external exposure study A study of the effects of external irradiation on an organism where the most of the dose is given in a single or small number of fractions closely in time. SLSO_relaxed.owl OBO:RBO_00000095 biolink:NamedThing chronic external exposure study A study of the effects of external irradiation on an organism where the dose is given over a protracted time period either continuously or in many fractions. Often these are lose dose studies. SLSO_relaxed.owl OBO:RBO_00000096 biolink:NamedThing chronic internal contamination study A study of the effects of internal irradiation on an organism where the radiation source is internalised within the body tissues ( eg. by injection), gastrointestinal ( eg gavage), urogenital, auditory or respiratory ( eg instillation or inhalation) systems. The dose is delivered over a long period of time, often continuously and generlly at low dose. For example long term Radon exposure by inhalation. SLSO_relaxed.owl OBO:RBO_00000097 biolink:NamedThing acute internal contamination study A study of the effects of internal irradiation on an organism where the radiation source is internalised within the body tissues ( eg. by injection), gastrointestinal ( eg gavage), urogenital, auditory or respiratory ( eg instillation or inhalation) systems. Most of the dose is given over a short period of time and is generally unfractionated, such as in brachytherapy. SLSO_relaxed.owl OBO:RBO_00000098 biolink:NamedThing acute mixed exposure route study A study of the effects of radiation exposure where the exposoure has an internal and external mode of application. Acute exposure involves usually a single exposure over a short period of time with no fractionation. SLSO_relaxed.owl OBO:RBO_00000099 biolink:NamedThing chronic mixed exposure route study A study of the effects of radiation exposure where the exposoure has an internal and external mode of application. Chronic exposure involves usually a continuous or highly fractionated exposure over a long period of time. SLSO_relaxed.owl OBO:RBO_00000108 biolink:NamedThing endocrine study A study of the effects of radiation on the endocrine system or of endocrine hormones on the effects of radiation. SLSO_relaxed.owl OBO:RBO_00000118 biolink:NamedThing risk estimate SLSO_relaxed.owl OBO:RBO_010015 biolink:NamedThing quality factor Dimensionless factor developed for purposes of radiation protection and assessing health risks in general terms that accounts for the relative biological effectiveness of different radiations in producing stochastic effects and is used to relate absorbed SLSO_relaxed.owl OBO:RBO_010018 biolink:NamedThing radiation weighting factor A factor used to allow for differences in the biological effectiveness between different radiations when calculating equivalent dose (H_T) (see equivalent dose). These factors are independent of the tissue or organ irradiated. SLSO_relaxed.owl OBO:RBO_00000119 biolink:NamedThing lifetime risk estimate SLSO_relaxed.owl OBO:RBO_00005039 biolink:NamedThing gamma irradiator A device which exposes samples to gamma radiation. SLSO_relaxed.owl OBO:RBO_00005070 biolink:NamedThing ionizing radiation device A device for exposing materials or biological organisms to ionizing radiation for research or therapeutic purposes. SLSO_relaxed.owl OBO:RBO_00000124 biolink:NamedThing cellular process SLSO_relaxed.owl OBO:RBO_00002002 biolink:NamedThing planned radiation exposure Planned exposure of an entity to radiation of any type, for example as part of a medical or experimental procedure with the intention of exposing the entity to radiation energy internally or externally. SLSO_relaxed.owl OBO:COB_0000082 biolink:NamedThing SLSO_relaxed.owl OBO:RBO_00002008 biolink:NamedThing planned anthropogenic radiation exposure Planned exposure to radiation generated through a device or exposure to a source emitting ionising radiation SLSO_relaxed.owl OBO:RBO_00002009 biolink:NamedThing accidental anthropogenic radiation exposure Accidental or incidental exposure to radiation from a man made process or machine. Covers both radiation accidents and routine occupational exposure. SLSO_relaxed.owl OBO:RBO_00002003 biolink:NamedThing medical diagnostic radiation exposure Planned exposure of an organism to radiation of any type, internally or externally, with the intention to effect a diagnosis of disease. SLSO_relaxed.owl OBO:RBO_00002005 biolink:NamedThing medical therapeutic radiation exposure Planned exposure of an organism to radiation of any type, internally or externally, with the intention to effect a cure or mitigation of disease. SLSO_relaxed.owl OBO:RBO_00015020 biolink:NamedThing internal experimental radiation exposure Planned exposure of an entity to radiation of any type, for example as part of a medical or experimental procedure with the intention of exposing the entity to radiation energy internally by the ingestion, inhalation or implantation of a source of radiation. SLSO_relaxed.owl OBO:RBO_00002006 biolink:NamedThing accidental non-medical anthropogenic radiation exposure Unplanned exposure to anthropogenic radiation of any type in any environment ; for example radiation from nuclear waste, nuclear industry discharge or weapons. SLSO_relaxed.owl OBO:RBO_00002010 biolink:NamedThing accidental medical anthropogenic radiation exposure Accidental exposure occurring during medical therapy or diagnostics, for example medical radiation accidents or overdoses. SLSO_relaxed.owl OBO:RBO_00002011 biolink:NamedThing unplanned naturally occurring radiation exposure Incidental exposure to naturally occurring radiation in a natural or anthropogenic environment, such as geographical areas with high background levels of radiation or specific locations such as Uranium mines. SLSO_relaxed.owl OBO:RBO_00002012 biolink:NamedThing planned naturally occurring radiation exposure Deliberate or knowing exposure to naturally occurring radiation in a natural or anthropogenic environment, such as a radon spa. SLSO_relaxed.owl OBO:RBO_00002025 biolink:NamedThing attitudinal study Study of the status or origins of a mental position, feeling or emotion toward a fact or state with respect to information or experience concerning radiation, radiation safety or ethicolegal constructs surrounding radiation and radiation safety and regulation. SLSO_relaxed.owl OBO:RBO_00002026 biolink:NamedThing communication study Study concerning exchange or transmission of thoughts, messages, or information between people or between authorities and the general public (for example educational information, risk communication, safety communication) concerning exposure to and use of radiation. SLSO_relaxed.owl OBO:RBO_00002027 biolink:NamedThing community study A study focussed on a set of people with some shared characteristic. The substance of shared element varies widely, from geography to a situation to interest to lives and values. The term is widely used to evoke sense of collectivity. For example communities collectively exposed to radioactive environmental contamination. SLSO_relaxed.owl OBO:RBO_00002028 biolink:NamedThing political and psephological study The study of political involvement in radiation and nuclear regulation, military use, and safety as shown by inclusion in political manifestos and messaging by established or informal groups and its impact on voting patterns and democracy. SLSO_relaxed.owl OBO:RBO_00002029 biolink:NamedThing psychometric study A study measuring "psychological" aspects of a person such as knowledge, skills, abilities, attitudes, or personality using defined scales. SLSO_relaxed.owl OBO:RBO_00002030 biolink:NamedThing behavioural study A study of human or animal activity, in terms of motivation, direction, result, emotion, perception, or etiology. SLSO_relaxed.owl OBO:RBO_00002031 biolink:NamedThing sociological study A study dealing with group relationships, patterns of collective behavior, and social organization. SLSO_relaxed.owl OBO:RBO_00002032 biolink:NamedThing social science and humanities study Studies involving fields of inquiry into human constructs and concerns as opposed to natural processes . These are traditionally the study of literature, philosophy, and religion. Included in this definition are sociological studies, especially those concerned with the social impact of the humanities. SLSO_relaxed.owl OBO:RBO_00002033 biolink:NamedThing perceptions, expectations and behaviours study Specifically an attitudinal study looking at how perception, for example of risk, and expectations affect behaviour. SLSO_relaxed.owl OBO:RBO_00002034 biolink:NamedThing holistic approaches to governance study Sociological, attitudinal, ethocolegal and regulatory approaches to governance of radiation and radioactive substance use. SLSO_relaxed.owl OBO:RBO_00002035 biolink:NamedThing responsible research and innovation study Studies on policy concerning socially and ethically responsible research and innovation SLSO_relaxed.owl OBO:RBO_00002036 biolink:NamedThing stakeholder engagement study Studies of the engagement between an organisational entity and those groups or individuals potentially or actually impacted by the actions of that entity over a range of activities and approaches. SLSO_relaxed.owl OBO:RBO_00002037 biolink:NamedThing risk and health communication study Study concerning the modes, efficacy and response to communication of risk and health impacts of radiation in all aspects. SLSO_relaxed.owl OBO:RBO_00002038 biolink:NamedThing radiological protection culture study Studies concenring the attitudes to and practices of radiological protection in defined groups of people. For example the nuclear industry of a country or within a specific laboratory. SLSO_relaxed.owl OBO:RBO_00002039 biolink:NamedThing genetic population study Genetic study done at the population level or among population groups, generally to find the cause, incidence or spread of a disease or to see the response to a treatment, nutrition or environment. SLSO_relaxed.owl OBO:RBO_00002040 biolink:NamedThing prospective study A type of study in which participants are enrolled into the study before they develop the disease or outcome in question. SLSO_relaxed.owl OBO:RBO_00002041 biolink:NamedThing registry study Observational studies which include an organized system that uses observational methods to collect uniform data (clinical and other) prospectively for a population defined by a particular disorder/disease, condition (including susceptibility to a disorder), or exposure (including products, health care services, and/or procedures) and that serves a predetermined scientific, clinical, or policy purpose. Patient registries may be single purpose or on-going data collection programs that address one or more questions. (AHRQ) An observational study that is also considered to be a Patient Registry. SLSO_relaxed.owl OBO:RBO_00002042 biolink:NamedThing retrospective study A study looking backwards in time using observations collected predominantly prior to subject selection and enrolment SLSO_relaxed.owl OBO:RBO_00002043 biolink:NamedThing incidence or prevalence study A study of the number of new cases of a given disease during a given period in a specified population. It also is used for the rate at which new events occur in a defined population. this class also includes PREVALENCE, which refers to all cases in the population at a given time. SLSO_relaxed.owl OBO:RBO_00002044 biolink:NamedThing situation awareness and decision support study Studies concerning the optimisation of situation awareness through gathering and analysing information, and methodologies for making decisions on that awareness, such as estimating the path of a radioactive fallout with respect to weather and population density and making a decision to evacuate a population. SLSO_relaxed.owl OBO:RBO_00002045 biolink:NamedThing civil protection study A study concerning the protection of the population from unexpected radioactive discharge or contamination, such as a dirty bomb, and civil safetyy coningency plans, such as deployment of emergency services and evacuation. SLSO_relaxed.owl OBO:RBO_00002046 biolink:NamedThing disaster planning study Studies on planning for unexpected natural or man-made radiological catastrophe of substantial extent causing significant property damage or destruction, loss of life or sometimes permanent changes to the natural environment. Broader scope than civil protection as may relate to livestock, food and water shortage, disease outbreak and extensive traumas caused by precipitating or consequential damage. SLSO_relaxed.owl OBO:RBO_00002047 biolink:NamedThing nuclear accident study Studies on plannig for or analysing a nuclear accident with release of airborn or waterborn contamination into the environment. Narrower than Disaster planning study but may be used to qualify an annotation to Disaster planning study if the source of contamination is a nuclear accident. A nuclear accident is not necessarily a disaster. SLSO_relaxed.owl OBO:RBO_00002048 biolink:NamedThing clinical trial study A controlled study designed to assess the safety and efficacy of new drugs, devices, treatments, or preventive measures in humans by comparing two or more interventions or regimens SLSO_relaxed.owl OBO:RBO_00002049 biolink:NamedThing medical radiological safety study Study of the effects of radiation used in a medical therapeutic or diagnostic context. Inlcudes radiation accidents in this context, excludes occupational exposure for health professionals. SLSO_relaxed.owl OBO:RBO_00002050 biolink:NamedThing occupational health study A study concerned with health and safety policy development, implementation and practice in the workplace including investigating accidents at work, and chronic occupational exposure. Includes monitoring compliance with health and safety legislation and study of the promotion and maintenance of physical and mental health in the work environment. SLSO_relaxed.owl OBO:RBO_00002051 biolink:NamedThing radiation based diagnostics study Study on the efficacy, outcomes and adverse consequences of exposure to medical diagnostic procedures using internal or external irradiation. SLSO_relaxed.owl OBO:RBO_00002052 biolink:NamedThing radiotherapy study Study of the efficacy, outcomes and adverse consequences of exposure to therapeutic use of ionizing and nonionizing radiation including RADIONUCLIDE THERAPY, therapeutic radiation with visible, laser, or ultraviolet light. Includes technical development of protocols and equipment. SLSO_relaxed.owl OBO:RBO_00002053 biolink:NamedThing therapeutics study A study involvingdevelopment of agents or procedures intended to produce an effect that is intended to mitigate or stop a pathologic process. SLSO_relaxed.owl OBO:RBO_00002054 biolink:NamedThing histopathologic study A study of the macroscopic and microscopic anatomical changes in diseased tissue. SLSO_relaxed.owl OBO:RBO_00002055 biolink:NamedThing radiation legislation study Study of legal and statutory instruments and legislation designed to regulate the safety, use and transport of radioactive materials, release of such materials into the environment, or external radiation. SLSO_relaxed.owl OBO:RBO_00002056 biolink:NamedThing regulatory harmonisation study Study of the policy approaches and their implementation concerned with harmonising regulatory guidelines and legislation dealing with radiation and radioactive substances between legislatures, generally internationally. SLSO_relaxed.owl OBO:RBO_00002057 biolink:NamedThing nuclear proliferation treaty study Study of the development, implementation and monitoring of nuclear non proliferation treaties between states. SLSO_relaxed.owl OBO:RBO_00002058 biolink:NamedThing bioterrorism study Studies concerning intentional release of organisms (germs), toxic chemicals, or radioactive substances with intent to harm or kill people or the environment, or to inflict panic within a population. SLSO_relaxed.owl OBO:RBO_00002059 biolink:NamedThing military defence study Study of strategies and their implementation towards defence against radiation used as a weapon conducted by military powers and institutions. May also include civil defence where the military has a significant operational role, but not disaster preparedness. SLSO_relaxed.owl OBO:RBO_00002060 biolink:NamedThing dna modification study Study of biological processes that involve adding/removing chemical moieties to/from DNA, including methylation, phosphorylation, dephosphorylation, etc. Includes interventional DNA modification. SLSO_relaxed.owl OBO:RBO_00002061 biolink:NamedThing histone modification study Study of biological processes that involve adding/removing chemical moieties to/from histones, including methylation, acetylation,phosphorylation, dephosphorylation, etc. SLSO_relaxed.owl OBO:RBO_00002062 biolink:NamedThing interview study Study conducted by means of structured or unstructured interviews of persons of interest. SLSO_relaxed.owl OBO:RBO_00002063 biolink:NamedThing genetic study A study of genetic variation and the inheritance of a trait or traits within a population or an individual including examination of genetic material for the presence or absence of cytogenetic or molecular genetic abnormalities. SLSO_relaxed.owl OBO:RBO_00002064 biolink:NamedThing imaging study A radiographic study used to evaluate a specific anatomic location for a specific purpose. This may include the assessment of imaging modalities and the development of new techniques. Includes PET, MRI, CT and related techniques. SLSO_relaxed.owl OBO:RBO_00002065 biolink:NamedThing mathematical modelling study Study concerned with the construction, analysis, evaluation, refinement etc. of mathematical or statistical models of the properties or behaviour of a set of entities, such as molecules, physiological processes, environmental processes such as nuclide transfer, such that functions are developed to reliably predict the behaviour of those entities. SLSO_relaxed.owl OBO:RBO_00002066 biolink:NamedThing model organism study A study usually conducted in a laboratory where non human animals are used to model aspects of a disease process or its therapy to provide insights into human biology or pathobiology. SLSO_relaxed.owl OBO:RBO_00002067 biolink:NamedThing monitoring technologies and metrology study Study concerning the development, use, calibration or standardisation of technologies for the qualitative or quantitative measurement of radiation and radionuclides. SLSO_relaxed.owl OBO:RBO_00002068 biolink:NamedThing radiochemistry study Study of the chemistry of radioactive materials including radioactive tracer studies of metabolic processes SLSO_relaxed.owl OBO:RBO_00002069 biolink:NamedThing policy development study Study of the development and implementation of public policy towards issues involving radiation SLSO_relaxed.owl OBO:RBO_00002070 biolink:NamedThing acoustic radiation study Study of the effects of acoustic radiation on cellular and organismal physiology and the effects of acoustic radiation emitted in response to exposure to ionising radiation. SLSO_relaxed.owl OBO:RBO_00002071 biolink:NamedThing environmental study_ abiotic_anthropogenic Study of radiation levels and effects in the human built environment. SLSO_relaxed.owl OBO:RBO_00002072 biolink:NamedThing natural environment study Study of radiation levels and effects in the natural environment. SLSO_relaxed.owl OBO:RBO_00002073 biolink:NamedThing ecological population modelling study The development and use of mathematical models and systems analysis for the description of naturally occurring non-human populations, and applications to measuring the effects of radiological contamination. SLSO_relaxed.owl OBO:RBO_00002074 biolink:NamedThing ecotoxicology study The study of environmental contamination with radiation and radioactive substances and the toxic effects on the ecosystem either through chemical toxicity or radiation exposure. SLSO_relaxed.owl OBO:RBO_00002075 biolink:NamedThing environmental radon study The study of environmental contamination with radon and the toxic effects on biota including humans. Both natural and anthropogenic environments. Includes radiometrics, safety policies and mitigation technologies. SLSO_relaxed.owl OBO:RBO_00002076 biolink:NamedThing radionuclide dispersal modelling study Mathematical modelling of radionuclide transfer and dispersal processes in water, earth or air, either directly or through the mediation of biota. SLSO_relaxed.owl OBO:RBO_00002077 biolink:NamedThing naturally occurring radioactive materials study Study of the ocurrence, levels and effects of naturally occurring radioactive materials such as Radon. SLSO_relaxed.owl OBO:RBO_00002078 biolink:NamedThing environmental radiation monitoring study Study involving the measurement of radiation levels, or concentration of radionuclides, in the natural or man made environment. Usually in a time series. SLSO_relaxed.owl OBO:RBO_00002079 biolink:NamedThing environmental radionuclide transfer study Study concerned with the measurement of transfer of radionuclides to biota from the environment. SLSO_relaxed.owl OBO:RBO_00002080 biolink:NamedThing non ionising electromagnetic radiation study Any study concenrd with the prevalence or effects on non-ionising radiations such as UV, acoustic, or RF. SLSO_relaxed.owl OBO:RBO_00002081 biolink:NamedThing nuclear installation study Study concerning the safety, regulation, activities and engineering of nuclear installations including power stations, waste processing plant, radionuclide generation and purification plant, and military nuclear establishments. May include occupational health studies if broader than just occupationaal health in scope. SLSO_relaxed.owl OBO:RBO_00002082 biolink:NamedThing nuclear waste study Study of the process of generation of nuclear waste, its monitoring, regulation, disposal and inadvertent discharge. SLSO_relaxed.owl OBO:RBO_00002083 biolink:NamedThing nuclear engineering study Study of the engineering of nuclear installations such as power plants. SLSO_relaxed.owl OBO:RBO_00002084 biolink:NamedThing mining study Study of the process, regulation and monitoring of mines where exposure to naturally occurring radiation presents an occupational hazard for workers or the process itself, for example run off water or spoil, constitutes an environmental hazard. SLSO_relaxed.owl OBO:RBO_00002085 biolink:NamedThing cell culture study A study using cells derived from an organism grown in artificial culture medium in a laboratory with the aim of understanding some aspect(s) of cell physiology, genetics or behaviour, generally as part of the testing of an hypothesis but also for diagnostic intent. SLSO_relaxed.owl OBO:RBO_00002086 biolink:NamedThing organ culture study A study using an organ, part of an organ or an organoid culture, derived from an organism and grown in artificial culture medium in a laboratory with the aim of understanding some aspect(s) of cell physiology, genetics or behaviour, generally as part of the testing of an hypothesis but also for diagnostic intent. The system differs from cell culture in the generation or maintenance of multiple cell types with the spatial and functional relationship between them derived from or reflecting the normal organisation in vivo. SLSO_relaxed.owl OBO:RBO_00002087 biolink:NamedThing molecular genetic study Any study involving the manipulation, measurement, or characterisation of DNA or RNA in a cell or organism. SLSO_relaxed.owl OBO:RBO_00002088 biolink:NamedThing molecular structural study Elucidation of the physical structure of a macromolecule, protein, carbohydrate, DNA or RNA, its analysis and manipulation based on structure/function considerations. SLSO_relaxed.owl OBO:RBO_00002089 biolink:NamedThing whole organism study A study using an intact organism, plant, animal, or microorganism SLSO_relaxed.owl OBO:RBO_00002090 biolink:NamedThing bystander effect study Study of the cellular phenomenon which radiation energy is not been directly deposited in cells by transfer of medium, proximity/justaposition, or other means, but results in their behaving as if they had been irradiated. SLSO_relaxed.owl OBO:RBO_00002091 biolink:NamedThing epigenetic study A study of heritable phenotype changes that do not involve alterations in the DNA sequence. This may be in intact organisms or in cells and includes population analysis of epigenetic phenomena and molecular analysis of gene expression and epigenetic modifications of chromatin such as DNA methylation and histone acetylation. SLSO_relaxed.owl OBO:RBO_00002092 biolink:NamedThing mutagenesis study Study of the frequency of induction , nature and consequences of the production of genetic or epigenetic alterations by any technique, including chemicals, radiation, recombination, or other molecular biology methods. SLSO_relaxed.owl OBO:RBO_00002093 biolink:NamedThing attitudinal study of nuclear industry risk perception Studies of the status or origins of a mental position, feeling or emotion toward a fact or state with respect to information or experience concerning radiation, radiation safety or regulation of the nuclear industries. SLSO_relaxed.owl OBO:RBO_00002094 biolink:NamedThing attitudinal study towards ionising radiation in the environment Studies of the status or origins of a mental position, feeling or emotion toward a fact or state with respect to information or experience concerning radiation, radiation safety or ecological integrity towards natural or anthropogenic ionising radiation in the environment. SLSO_relaxed.owl OBO:RBO_00002095 biolink:NamedThing attitudinal study towards non-ionising radiation in the environment Studies of the status or origins of a mental position, feeling or emotion toward a fact or state with respect to information or experience concerning radiation, radiation safety or ecological integrity towards natural or anthropogenic non-ionising radiation in the natural environment. SLSO_relaxed.owl OBO:RBO_00002096 biolink:NamedThing attitudinal study towards medical radiation procedures Studies of the status or origins of a mental position, feeling or emotion toward a fact or state with respect to information or experience concerning radiation, radiation safety and efficacy in a clinical context where radiation is used for diagnostic or therapeutic procedures.. SLSO_relaxed.owl OBO:RBO_00002097 biolink:NamedThing attitudinal study towards radiation in the occupational environment Studies of the status or origins of a mental position, feeling or emotion toward a fact or state with respect to information or experience concerning radiation, radiation safety towards natural or anthropogenic non-ionising radiation in the occupational environment. SLSO_relaxed.owl OBO:RBO_00002098 biolink:NamedThing authority trust study Study of social and individual trust in the position and activities of legal or other competent advisory or regulatory authorities. SLSO_relaxed.owl OBO:RBO_00002099 biolink:NamedThing risk communication study Study on the modality, efficacy and responses to communcation of information or advice to populations or individuals, on the safety and risks of exposure to ionising radiation in any context. SLSO_relaxed.owl OBO:RBO_00002100 biolink:NamedThing public communication study Study on the modality, efficacy and responses to communication of information or advice to populations or individuals, on the safety and risks of exposure to ionising radiation in any context. SLSO_relaxed.owl OBO:RBO_00002101 biolink:NamedThing public education study Study on the modality, efficacy and responses to communication of information or advice to populations on any aspect of radiation, conceived of as an educational programme, and including a wider scope than just safety and risk. For example basic nuclear physics, emergency action advice. SLSO_relaxed.owl OBO:RBO_00002102 biolink:NamedThing social affairs and community health study Study involving attitudes, health status, social organisation of defined communities identified by common characteristics such as occupation type, geography, gender identity, with respect to radiation. SLSO_relaxed.owl OBO:RBO_00002103 biolink:NamedThing community planning study Studies involving creation and assessment of plans for the future physical arrangement, well being, efficiency and condition of a community. It may have the goals of improving health, promoting efficiency in the provision of services and resources on a comprehensive basis for a whole community. In the context of radiation this may be concerned with community planning for dealing with mitigation measures for local NORM, or organised community-wide continegency measures for nuclear accident or recovery from such. SLSO_relaxed.owl OBO:RBO_00002104 biolink:NamedThing community survey study Study concerned with eliciting information in a structured way concerning issues of interest from members of a community defined by common characteristics, for example occupation, geographical location, personal history or gender. SLSO_relaxed.owl OBO:RBO_00002105 biolink:NamedThing individual behaviour study A study concerned with human or animal activity, in terms of motivation, direction, result, emotion, perception, or etiology at the level of slected individuals. May be carried out by observation or as individual responses to a questioannaire or interview in the case of humans where the person records their own assessment of their behaviour. SLSO_relaxed.owl OBO:RBO_00002106 biolink:NamedThing population behaviour study A study concerned with human or animal activity, in terms of motivation, direction, result, emotion, perception, or etiology within substantial populations of individuals. Likely to be carried out by mass observation or indirect inference. SLSO_relaxed.owl OBO:RBO_00002107 biolink:NamedThing radiotherapeutic modelling study Mathematical modelling for theraputic regime optimisation and for optimal tumor response, for example modelling spatiotemporal dynamics of tumor and blood volume fraction, and predicting response to radiation therapy. Also studies for beam modelling and multiimaging techniques. SLSO_relaxed.owl OBO:RBO_00002108 biolink:NamedThing building materials radiological safety study Study of the radiolonuclide components and emissions from building materials SLSO_relaxed.owl OBO:RBO_00002109 biolink:NamedThing building radiological safety study Studies on radiological safety within buildings. Primary purpose os for buildings not specifially designed to hold radioactive materials but anaylyis and mitigation of risks from radioactive exposure from the local environment or materials. SLSO_relaxed.owl OBO:RBO_00002110 biolink:NamedThing meteorology study Study of the weather and atmospheric dynamics mainly with respect to dissemination of radionuclides. SLSO_relaxed.owl OBO:RBO_00002111 biolink:NamedThing environmental study_abiotic Study of non-living objects in the environment, such as soils or rocks. SLSO_relaxed.owl OBO:RBO_00002112 biolink:NamedThing environmental study_biota ( non human) Study of non-human biota in the natural environment. SLSO_relaxed.owl OBO:RBO_00002113 biolink:NamedThing environmental study_panbiota (all) Study which may include human and non-human biota in the environment. SLSO_relaxed.owl OBO:RBO_00002114 biolink:NamedThing wireless communication radiation study Study of the measurement, effects and regulation of wireless communication signals, for example mobile phone radiation and microwave communication. SLSO_relaxed.owl OBO:RBO_00002115 biolink:NamedThing gamma ray photon Photons having energies that are greater than tens of thousands of electron volts (eV). SLSO_relaxed.owl OBO:RBO_00002116 biolink:NamedThing x-ray photon A photon with energies from about 100 eV (electron volts) to 1 MeV (million electron volts). SLSO_relaxed.owl OBO:RBO_00015021 biolink:NamedThing energy deposition event The direct or indirect transfer of energy from radiation to a medium through ionisation or excitation of the atoms of the medium. SLSO_relaxed.owl OBO:RBO_00002120 biolink:NamedThing unplanned anthropogenic irradiation Unplanned irradiation that is of anthropogenic origin SLSO_relaxed.owl OBO:RBO_00002121 biolink:NamedThing unplanned naturally occurring radiation exposure Unplanned irradiation that is non-anthropogenic in origin SLSO_relaxed.owl OBO:RBO_00002125 biolink:NamedThing anthropogenic environment radiation monitoring Monitoring for radiation dose or quality within a man-made or constructed environment such as a building or a vehicle. SLSO_relaxed.owl OBO:RBO_00002126 biolink:NamedThing natural environment radiation monitoring Monitoring for radiation dose or quality within a natural environment. SLSO_relaxed.owl OBO:RBO_00005002 biolink:NamedThing light ion radiation Atomic nuclei, variously defined as having atomic number 2, 3, 4, 5 or 6 and kinetic energy imparted by natural or artificial means SLSO_relaxed.owl OBO:RBO_010006 biolink:NamedThing delta ray Highly energetic electrons produced during inelastic collisions between ionizing radiation and atomic electrons. In a small proportion of collisions, the ejected electron receives a considerable amount of energy (i.e., >1,000 eV), allowing it to travel a SLSO_relaxed.owl OBO:RBO_00005004 biolink:NamedThing Iron-56 nucleus An atomic nucleus with 26 protons and 30 neutrons SLSO_relaxed.owl OBO:RBO_00005005 biolink:NamedThing Silicon-28 nucleus An atomic nucleus with 14 protons and 14 neutrons SLSO_relaxed.owl OBO:RBO_00005006 biolink:NamedThing Carbon-12 nucleus An atomic nucleus with 6 protons and 6 neutrons SLSO_relaxed.owl OBO:RBO_00005007 biolink:NamedThing Helium-4 nucleus An atomic nucleus with 2 protons and 2 neutrons SLSO_relaxed.owl OBO:RBO_00005008 biolink:NamedThing Neon-20 nucleus An atomic nucleus with 10 protons and 10 neutrons SLSO_relaxed.owl OBO:RBO_00005048 biolink:NamedThing Niobium-93 nucleus An atomic nucleus with 41 protons and 52 neutrons SLSO_relaxed.owl OBO:RBO_00005049 biolink:NamedThing Silver-107 nucleus An atomic nucleus with 47 protons and 60 neutrons SLSO_relaxed.owl OBO:RBO_00005050 biolink:NamedThing Xenon-129 nucleus An atomic nucleus with 54 protons and 75 neutrons SLSO_relaxed.owl OBO:RBO_00005051 biolink:NamedThing Tantalum-181 nucleus An atomic nucleus with 73 protons and 108 neutrons SLSO_relaxed.owl OBO:RBO_00005052 biolink:NamedThing Gold-197 nucleus An atomic nucleus with 79 protons and 118 neutrons SLSO_relaxed.owl OBO:RBO_00005053 biolink:NamedThing Nitrogen-14 nucleus An atomic nucleus with 7 protons and 7 neutrons SLSO_relaxed.owl OBO:RBO_00005054 biolink:NamedThing Oxygen-16 nucleus An atomic nucleus with 8 protons and 8 neutrons SLSO_relaxed.owl OBO:RBO_00005055 biolink:NamedThing Argon-40 nucleus An atomic nucleus with 18 protons and 22 neutrons SLSO_relaxed.owl OBO:RBO_00005056 biolink:NamedThing Titanium-48 nucleus An atomic nucleus with 22 protons and 26 neutrons SLSO_relaxed.owl OBO:RBO_00005057 biolink:NamedThing Krypton-84 nucleus An atomic nucleus with 36 protons and 48 neutrons SLSO_relaxed.owl OBO:RBO_00005011 biolink:NamedThing absorbed radiation dose rate The amount of energy from any type of ionizing radiation deposited in a specified mass of any medium per unit time. SLSO_relaxed.owl OBO:RBO_00005030 biolink:NamedThing radiation fraction interval Time between fractions in a fractionated irradiation. SLSO_relaxed.owl OBO:RBO_00005038 biolink:NamedThing average fractionated dose rate The total dose administered in a series of radiation fractions divided by the elapsed time between the beginning of the first exposure fraction and the end of the last exposure fraction SLSO_relaxed.owl OBO:RBO_00005015 biolink:NamedThing sham irradiation Sham irradiation refers to a procedure in which participants or subjects in an experiment are exposed to simulated radiation, mimicking precisely the conditions of actual irradiation. The purpose of using sham irradiation is to create a control group that experiences the non-specific effects of the experimental setup, while excluding the specific effects associated with radiation exposure. SLSO_relaxed.owl OBO:RBO_00005028 biolink:NamedThing irradiation protocol A protocol for administering radiation to a sample SLSO_relaxed.owl OBO:RBO_00005029 biolink:NamedThing radiation fraction One of the series of individual doses administered to a sample in a fractionated irradiation. SLSO_relaxed.owl OBO:RBO_00005031 biolink:NamedThing high altitude The region of the atmosphere above 8000 feet above sea level. Altitudes above 12000 feet are sometimes referred to as very high altitude, and above 18000 feet as extremely high altitude. SLSO_relaxed.owl OBO:RBO_00005032 biolink:NamedThing sham-irradiated A quality of a biotic or abiotic sample or individual which is part of an experiment that tests the effects of radiation on organisms or materials by isolating variables as dictated by the scientific method in order to make a conclusion about the effect of such variables. In sham irradiation the precise treatment of the sample must be identical to that of the experimental samples and should be made explicit in the description of the method. SLSO_relaxed.owl OBO:RBO_00005033 biolink:NamedThing parabolic flight aircraft An aircraft which flies a series of parabolic arcs to simulate micrgravity. SLSO_relaxed.owl OBO:RBO_00005034 biolink:NamedThing high altitude research aircraft An aircraft which flies at altitudes greater than commercial aircraft altitudes for research purposes. SLSO_relaxed.owl OBO:RBO_00005035 biolink:NamedThing uncrewed aerial vehicle An research aircraft designed to operate without crew members, either autonomously or under control from a ground station SLSO_relaxed.owl OBO:RBO_00005071 biolink:NamedThing high-altitude balloon High-altitude balloons are crewed or uncrewed balloons, usually filled with helium or hydrogen, that are released into the stratosphere, generally attaining between 18 and 37 km (11 and 23 mi; 59,000 and 121,000 ft) above sea level. SLSO_relaxed.owl OBO:RBO_00005040 biolink:NamedThing particle charge The electric charge of a particle used in an irradiation SLSO_relaxed.owl OBO:UO_0000219 biolink:NamedThing electric charge SLSO_relaxed.owl OBO:UO_1000220 biolink:NamedThing coulomb based unit SLSO_relaxed.owl OBO:RBO_00005041 biolink:NamedThing radiation dosimetry The measurement of the amount of radiation taken up by a sample. SLSO_relaxed.owl OBO:RBO_010002 biolink:NamedThing biodosimetry Use of a biological response as an indicator of a dose of an effective agent (e.g., the extent of decline in peripheral blood lymphocytes of humans exposed to ionizing radiation can be used as an indicator of the absorbed dose to the whole body from that SLSO_relaxed.owl OBO:RBO_00005066 biolink:NamedThing miligray per second A derived absorbed dose unit which is equal to one milligray absorbed per second SLSO_relaxed.owl OBO:UO_0000129 biolink:NamedThing absorbed dose unit SLSO_relaxed.owl OBO:UO_0010063 biolink:NamedThing milligray per day SLSO_relaxed.owl OBO:UO_0010064 biolink:NamedThing milligray per hour SLSO_relaxed.owl OBO:UO_0010065 biolink:NamedThing milligray per second SLSO_relaxed.owl OBO:UO_1000134 biolink:NamedThing gray based unit SLSO_relaxed.owl OBO:UO_1010060 biolink:NamedThing gray per minute based unit SLSO_relaxed.owl OBO:RBO_00005068 biolink:NamedThing indirect cellular response to radiation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of radiation acting on another cell and not on the responding cell. The process begins with detection of radiation by a cell or cells and ends with a change in state or activity of a different cell or cells. SLSO_relaxed.owl OBO:RBO_00005069 biolink:NamedThing indirect cellular response to ionising radiation Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of exposure to ionising radiation which acts on another cell and not on the responding cell. The process begins with detection of the ionising radiation by one cell or cells and ends with a change in state or activity of a different cell or cells. SLSO_relaxed.owl OBO:RBO_00005074 biolink:NamedThing non-targeted effects of ionising radiation Non-targeted effects of ionising radiation are characterised by cellular responses that occur in cells in which energy from ionizing radiation has not been deposited. The distinct classes of non-targeted effects include Genomic Instability, and Bystander effect which latter includes Abscopal effects and Bystander-mediated adaptive response. These can also arise non-clonally in the progeny of irradiated somatic or germ cells, resulting in radiation-induced genomic instability and transgenerational genomic instability respectively. (Kadhim M, Salomaa S, Wright E, et al. Non-targeted effects of ionising radiation--implications for low dose risk. Mutat Res. 2013;752(2):84-98. doi:10.1016/j.mrrev.2012.12.001) SLSO_relaxed.owl OBO:RBO_00015002 biolink:NamedThing nanodosimetry assay An assay of the pattern (frequency and spatial distribution) of ionization events produced by energy deposition in time and space in a substance characterized by linear dimensions of the order of 1-100 nanometers SLSO_relaxed.owl OBO:RBO_00015003 biolink:NamedThing microdosimetry assay An assay of the pattern (frequency and spatial distribution) of ionization events produced by energy deposition in time and space in a substance characterized by linear dimensions of the order of 1-100 micrometers SLSO_relaxed.owl OBO:RBO_00015004 biolink:NamedThing alpha decay Nuclear decay in which an alpha particle is emitted. SLSO_relaxed.owl OBO:RBO_00015005 biolink:NamedThing beta decay Radioactive decay in which a beta particle is emitted or in which orbital electron capture occurs. SLSO_relaxed.owl OBO:RBO_00015012 biolink:NamedThing ionization cluster A group of ionization events closely related in time and space, occurring in a specified target volume and originating from a single primary ionizing particle. SLSO_relaxed.owl OBO:RBO_00015015 biolink:NamedThing control specimen role A control specimen role of a biotic or abiotic sample or individual describes a specimen by its purpose, and therefore treatment, within a planned experimental process that tests hypotheses by isolating variables as dictated by the scientific method in order to make a conclusion about the effect of such variables. The quality of control inhering in the sample role exists as a result of the historical treatment of the sample. In a controlled experiment, two or more virtually identical experiments are conducted, but the factor being tested is varied in only one of them. This serves to isolate any causal phenomena. A control may have been subject to treatments during the experiment that might alter its state or behaviour and is therefore distinguishable from the sample as initial input into the experiment. However such treatments should in all cases but that of the variable under scrutiny, be the same as the experimental sample. SLSO_relaxed.owl OBO:RBO_00015016 biolink:NamedThing approximate sham irradiation Sham irradiation in which an identical irradiation protocol (with the exception of the administration of the radiation exposure) is not followed in every respect. SLSO_relaxed.owl OBO:RBO_00015019 biolink:NamedThing complete sham irradiation Sham irradiation in which an identical irradiation protocol is followed in every respect, with the exception of the administration of the radiation exposure. SLSO_relaxed.owl OBO:RBO_00015024 biolink:NamedThing mixed ion and photon irradiation study A mixed ion and photon irradiation study typically involves exposing a sample or system to a combination of these types of radiation. This could include exposure to various forms of ionizing radiation, such as gamma rays, X-rays, and particle radiation. Exposure might be simultaneous or sequential and from anthropogenic or natural sources of radiation. The goal is to understand how the different types of radiation interact with each other and their combined effects on the material or biological system under investigation. SLSO_relaxed.owl OBO:RBO_00015027 biolink:NamedThing multiple ion irradiation study A multiple ion irradiation study typically involves exposing a sample or system to a combination of different types of charged particle radiation. Exposure might be simultaneous or sequential and from anthropogenic or natural sources of radiation. The goal is to understand how the different types of radiation interact with each other and their combined effects on the material or biological system under investigation. SLSO_relaxed.owl OBO:RBO_00015025 biolink:NamedThing mixed ion and photon simultaneous irradiation study A mixed ion and photon simultaneous irradiation study typically involves simultaneously exposing a sample or system to a combination of these types of radiation. This could include exposure to various forms of ionizing radiation, such as gamma rays, X-rays, and particle radiation. Exposure might be from anthropogenic or natural sources of radiation. The goal is to understand how the different types of radiation interact with each other and their combined effects on the material or biological system under investigation. SLSO_relaxed.owl OBO:RBO_00015026 biolink:NamedThing mixed ion and photon sequential irradiation study A mixed ion and photon sequential irradiation study typically involves sequentially exposing a sample or system to a combination of these types of radiation. This could include exposure to various forms of ionizing radiation, such as gamma rays, X-rays, and particle radiation. Exposure might be from anthropogenic or natural sources of radiation. The goal is to understand how the different types of radiation interact with each other and their combined effects on the material or biological system under investigation. SLSO_relaxed.owl OBO:RBO_00015028 biolink:NamedThing multiple ion simultaneous irradiation study A multiple ion simultaneous irradiation study typically involves simultaneously exposing a sample or system to a combination of ions. This could include exposure to various forms of particle radiation, for example ion beams. Exposure might be from anthropogenic or natural sources of radiation. The goal is to understand how the different types of radiation interact with each other and their combined effects on the material or biological system under investigation. SLSO_relaxed.owl OBO:RBO_00015029 biolink:NamedThing multiple ion sequential irradiation study A multiple ion sequential irradiation study involves exposing a sample or system to a combination of different ions. This could include exposure to various forms of particle radiation such as ion beams. Exposure might be from anthropogenic or natural sources of radiation. The goal is to understand how the different types of radiation interact with each other and their combined effects on the material or biological system under investigation. SLSO_relaxed.owl OBO:RBO_010001 biolink:NamedThing radiation attenuation The reduction of radiation intensity upon passage of radiation through matter SLSO_relaxed.owl OBO:RBO_010003 biolink:NamedThing bystander effect The term used to describe the effects on cells in proximity to irradiated cells, but through which radiation has not passed. In experimental radiation biology, the bystander effect can be investigated by targeting individual cells, or by using doses low enough that the probability for a given cell to be hit by a particle is less than one. SLSO_relaxed.owl OBO:RBO_010008 biolink:NamedThing excess lifetime risk of cancer The increased risk from induced cancer due to exposure when the effects over an entire lifetime are accounted for. Individuals who would have died of cancer anyway but die early because of exposure are not included SLSO_relaxed.owl OBO:RBO_010009 biolink:NamedThing fast neutron Neutrons of energies above a few hundred kiloelectron volts (keV) SLSO_relaxed.owl OBO:SDDO_1000001 biolink:NamedThing pds_Data_Set_PDS3 A PDS data product from the PDS 3 data model. SLSO_relaxed.owl OBO:SDDO_1000007 biolink:NamedThing PDS data product A product from the PDS data system SLSO_relaxed.owl OBO:SDDO_1000008 biolink:NamedThing pds_Collection_with_Type_Data A PDS data product from the PDS 4 data model. SLSO_relaxed.owl OBO:SDDO_1000002 biolink:NamedThing spase:DisplayData A graphical representation of data wherein the underlying numeric values are not (readily) accessible for analysis. SLSO_relaxed.owl OBO:SDDO_3000051 biolink:NamedThing data product A product containing science data from some investigation. SLSO_relaxed.owl OBO:SDDO_1000003 biolink:NamedThing spase:Catalog A tabular listing of events or observational notes, especially those that have utility in aiding a user in locating data. SLSO_relaxed.owl OBO:SDDO_1000004 biolink:NamedThing spase:NumericalData Data stored as numerical values in one or more specified formats. SLSO_relaxed.owl OBO:SDDO_3000069 biolink:NamedThing study A data product from the GeneLab repository SLSO_relaxed.owl OBO:SDDO_1000009 biolink:NamedThing discovery interface An interface that 1) presents users with discovery criteria and may 2) lead to an access interface. SLSO_relaxed.owl OBO:SDDO_3000075 biolink:NamedThing access interface A software interface that 1) presents users with selection criteria and 2) presents products or services that meet the criteria the user then selects. SLSO_relaxed.owl http://www.ebi.ac.uk/swo/interface/SWO_9000051 biolink:NamedThing web service A web service is a software interface which works as a method of communication between two electronic devices over the World Wide Web and which is provided at a particular network address. There are two major classes of Web services: REST-compliant Web services, and arbitrary (or application-specific) Web services. SLSO_relaxed.owl http://www.ebi.ac.uk/swo/interface/SWO_9000052 biolink:NamedThing graphical user interface A Graphical user interface is a type of software interface that allows users to interact with electronic devices using images rather than text commands. A GUI represents the information and actions available to a user through graphical icons and visual indicators such as secondary notation, as opposed to text-based interfaces, typed command labels or text navigation.|https://en.wikipedia.org/wiki/Graphical_user_interface, accessed 6 June 2013. SLSO_relaxed.owl http://www.ebi.ac.uk/swo/interface/SWO_9000054 biolink:NamedThing application programming interface An application programming interface is a set of routines, protocols, and tools for building software applications. An API expresses a software component in terms of its operations, inputs, outputs, and underlying types. An API defines functionalities that are independent of their respective implementations, which allows definitions and implementations to vary without compromising each other. The API specifies how software components should interact. SLSO_relaxed.owl OBO:SDDO_1000010 biolink:NamedThing field campaign A campaign that is coordinated among one or more individuals and/or one or more organizations. SLSO_relaxed.owl OBO:SDDO_3000045 biolink:NamedThing campaign A systematic set of activities undertaken to meet a particular science objective. SLSO_relaxed.owl OBO:SDDO_1000012 biolink:NamedThing observing campaign A campaign that 1) uses primarily but not exclusively existing facilities and 2) after and possibly during which other investigations are carried out using the same facilities. SLSO_relaxed.owl OBO:SDDO_3000099 biolink:NamedThing phenomenon A fact or situation that is observed to exist. SLSO_relaxed.owl OBO:SDDO_3000077 biolink:NamedThing research investigation An investigation that 1) uses existing facilities and 2) is under the direction of a single individual. SLSO_relaxed.owl OBO:SDDO_3000079 biolink:NamedThing information product A product that describes some entity. SLSO_relaxed.owl OBO:SDDO_3000059 biolink:NamedThing space agency A government agency engaged in activities related to outer space and space exploration. SLSO_relaxed.owl OBO:SDDO_3000103 biolink:NamedThing organization An entity that can bear roles, has members, and has a set of organization rules. SLSO_relaxed.owl OBO:SDDO_3000107 biolink:NamedThing program A broad framework of goals to be achieved. SLSO_relaxed.owl http://www.w3.org/ns/sosa/Platform biolink:NamedThing Platform A Platform is an entity that hosts other entities, particularly Sensors, Actuators, Samplers, and other Platforms. SLSO_relaxed.owl OBO:SLSO_0000032 biolink:NamedThing spacecraft Devices, manned and unmanned, which are designed to be placed into an orbit about the Earth or into a trajectory to another celestial body. SLSO_relaxed.owl OBO:SDDO_3000080 biolink:NamedThing experiment Apparatus Hardware used in conducting an experiment. SLSO_relaxed.owl OBO:SDDO_3000084 biolink:NamedThing software An information content entity that 1) contains a set of machine-readable instructions (most often in the form of a computer program) that 2) conform to a given syntax (sometimes referred to as a language) that 3) is interpretable by a given processor and that 4) directs a computer's processor to perform specific operations. SLSO_relaxed.owl OBO:SDDO_3000090 biolink:NamedThing person An agent that is a human being. SLSO_relaxed.owl OBO:SDDO_3000091 biolink:NamedThing NASAMission A mission led or funded by NASA SLSO_relaxed.owl OBO:SLSO_0000038 biolink:NamedThing research mission Coordinated tasks and operations undertaken to meet a set of specific scientific or technical objectives, within clearly delineated time and location constraints. SLSO_relaxed.owl OBO:SDDO_3000092 biolink:NamedThing instrument An instrument is a physical object that can be used to collect data. SLSO_relaxed.owl http://www.w3.org/ns/sosa/Sensor biolink:NamedThing Sensor Device, agent (including humans), or software (simulation) involved in, or implementing, a Procedure. Sensors respond to a stimulus, e.g., a change in the environment, or input data composed from the results of prior Observations, and generate a Result. Sensors can be hosted by Platforms. SLSO_relaxed.owl OBO:SDDO_3000095 biolink:NamedThing metadata product An information product that contains structured metadata. SLSO_relaxed.owl http://www.w3.org/ns/sosa/Observation biolink:NamedThing Observation Act of carrying out an (Observation) Procedure to estimate or calculate a value of a property of a FeatureOfInterest. Links to a Sensor to describe what made the Observation and how; links to an ObservableProperty to describe what the result is an estimate of, and to a FeatureOfInterest to detail what that property was associated with. SLSO_relaxed.owl OBO:SDDO_3000101 biolink:NamedThing photoGallery A graphical user interface that provides access to photographs/images. SLSO_relaxed.owl OBO:SDDO_3000114 biolink:NamedThing NASA program SLSO_relaxed.owl OBO:SLSO_0000019 biolink:NamedThing scientific results A type of document, physical or digital, comprised of data and/or analytical assessment related to a scientific protocol. SLSO_relaxed.owl OBO:SLSO_0000028 biolink:NamedThing LSDA document NCIt Definition: A physical object, or electronic counterpart, that is characterized by containing writing which is meant to be human-readable. SLSO_relaxed.owl OBO:SLSO_0000020 biolink:NamedThing experiment document Any document (electronic or written record) that is about an experiment process (limited to the conduct of the experiment) SLSO_relaxed.owl OBO:SLSO_0000023 biolink:NamedThing hardware document A document that is about an item of hardware. For LSDA, hardware documents include hardware design, manufacturing, and operations documents SLSO_relaxed.owl OBO:SLSO_0000025 biolink:NamedThing project document A document that is about a project. For LSDA, project documents include project operations, schedules, and other related documents. SLSO_relaxed.owl OBO:SLSO_0000039 biolink:NamedThing publication document NCIt Definition: A printed or electronic work offered for distribution. MSH Definition: Copies of a work or document distributed to the public by sale, rental, lease, or lending. (From ALA Glossary of Library and Information Science, 1983, p181) CSP Definition: copy or copies of a document offered for distribution; includes the preparation of the documented material. SLSO_relaxed.owl OBO:SLSO_0000040 biolink:NamedThing technical paper A bounded physical or digital representation of a body of information designed with the capacity (and usually intent) to communicate a particular subject, art, craft, technique, applied science and/or industrial service. SLSO_relaxed.owl OBO:SLSO_0000046 biolink:NamedThing newsletter document NCIt Definition: A regularly issued printed or electronic report describing a main topic of interest to its subscribers. SLSO_relaxed.owl OBO:SLSO_0000048 biolink:NamedThing mission document A document that is about a mission. For LSDA, mission documents include mission personnel, operations, schedules, and other related documents. SLSO_relaxed.owl OBO:T4FS_0000347 biolink:NamedThing dataset Any organized collection of data in a computational format, defined by a theme or category that reflects what is being measured/observed/monitored. The presentation of the data in the application is enabled through metadata.REFERENCE. Research Data Alliance http://smw-rda.esc.rzg.mpg.de/index.php/Main_Page ; Mapping the Data Landscape 2011 Summit; TBS Standard on Geospatial Data (ISO 19115:2003); Environment Canada data stewardship … α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. SLSO_relaxed.owl RO:0002232 biolink:NamedThing has end location x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y SLSO_relaxed.owl RO:0002479 biolink:NamedThing has part that occurs in p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c. SLSO_relaxed.owl RO:0002233 biolink:NamedThing has input p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p. SLSO_relaxed.owl RO:0002352 biolink:NamedThing input of inverse of has input SLSO_relaxed.owl RO:0002234 biolink:NamedThing has output p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p. SLSO_relaxed.owl RO:0002353 biolink:NamedThing output of inverse of has output SLSO_relaxed.owl RO:0002254 biolink:NamedThing has developmental contribution from x has developmental contribution from y iff x has some part z such that z develops from y SLSO_relaxed.owl RO:0002255 biolink:NamedThing developmentally contributes to inverse of has developmental contribution from SLSO_relaxed.owl RO:0002385 biolink:NamedThing has potential to developmentally contribute to x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y SLSO_relaxed.owl RO:0002324 biolink:NamedThing developmentally related to A relationship that holds between entities participating in some developmental process (GO:0032502) SLSO_relaxed.owl RO:0002263 biolink:NamedThing acts upstream of c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes. SLSO_relaxed.owl RO:0002264 biolink:NamedThing acts upstream of or within c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process. SLSO_relaxed.owl http://wiki.geneontology.org/index.php/Acts_upstream_of biolink:NamedThing SLSO_relaxed.owl http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within biolink:NamedThing SLSO_relaxed.owl RO:0002384 biolink:NamedThing has developmental potential involving x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction). SLSO_relaxed.owl RO:0002287 biolink:NamedThing part of developmental precursor of SLSO_relaxed.owl RO:0002295 biolink:NamedThing results in developmental progression of p results in the developmental progression of s iff p is a developmental process and s is an anatomical entity and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss). SLSO_relaxed.owl http://wiki.geneontology.org/index.php/Ontology_extensions biolink:NamedThing SLSO_relaxed.owl RO:0002297 biolink:NamedThing results in formation of SLSO_relaxed.owl RO:0002354 biolink:NamedThing formed as result of SLSO_relaxed.owl RO:0002303 biolink:NamedThing has habitat x 'has habitat' y if and only if: x is an organism, y is a habitat, and y can sustain and allow the growth of a population of xs. SLSO_relaxed.owl RO:0002321 biolink:NamedThing ecologically related to A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297) SLSO_relaxed.owl IAO:0000428 biolink:NamedThing requires discussion A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues. SLSO_relaxed.owl RO:0004047 biolink:NamedThing causally upstream of or within, positive effect SLSO_relaxed.owl https://wiki.geneontology.org/Causally_upstream_of,_positive_effect biolink:NamedThing SLSO_relaxed.owl RO:0004046 biolink:NamedThing causally upstream of or within, negative effect SLSO_relaxed.owl https://wiki.geneontology.org/Causally_upstream_of,_negative_effect biolink:NamedThing SLSO_relaxed.owl RO:0002502 biolink:NamedThing depends on SLSO_relaxed.owl PMID:20064205 biolink:NamedThing SLSO_relaxed.owl RO:0002327 biolink:NamedThing enables c enables p iff c is capable of p and c acts to execute p. SLSO_relaxed.owl RO:0002333 biolink:NamedThing enabled by inverse of enables SLSO_relaxed.owl RO:0002329 biolink:NamedThing part of structure that is capable of this relation holds between c and p when c is part of some c', and c' is capable of p. SLSO_relaxed.owl RO:0002331 biolink:NamedThing involved in c involved_in p if and only if c enables some process p', and p' is part of p SLSO_relaxed.owl RO:0002431 biolink:NamedThing involved in or involved in regulation of c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p SLSO_relaxed.owl http://wiki.geneontology.org/index.php/Involved_in biolink:NamedThing SLSO_relaxed.owl RO:0002427 biolink:NamedThing causally downstream of or within inverse of causally upstream of or within SLSO_relaxed.owl RO:0002350 biolink:NamedThing is member of is member of is a mereological relation between a item and a collection. SLSO_relaxed.owl RO:0002351 biolink:NamedThing has member has member is a mereological relation between a collection and an item. SLSO_relaxed.owl RO:0002379 biolink:NamedThing spatially coextensive with x spatially_coextensive_with y if and inly if x and y have the same location SLSO_relaxed.owl RO:0002404 biolink:NamedThing causally downstream of inverse of upstream of SLSO_relaxed.owl RO:0002405 biolink:NamedThing immediately causally downstream of SLSO_relaxed.owl RO:0002412 biolink:NamedThing immediately causally upstream of p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q. SLSO_relaxed.owl RO:0002407 biolink:NamedThing indirectly positively regulates p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q. SLSO_relaxed.owl RO:0012012 biolink:NamedThing indirectly regulates p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q. SLSO_relaxed.owl RO:0002409 biolink:NamedThing indirectly negatively regulates p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q. SLSO_relaxed.owl RO:0002410 biolink:NamedThing causally related to relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause. SLSO_relaxed.owl RO:0002418 biolink:NamedThing causally upstream of or within p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q. SLSO_relaxed.owl RO:0002501 biolink:NamedThing causal relation between processes p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q. SLSO_relaxed.owl RO:0002428 biolink:NamedThing involved in regulation of c involved in regulation of p if c is involved in some p' and p' regulates some p SLSO_relaxed.owl RO:0002429 biolink:NamedThing involved in positive regulation of c involved in regulation of p if c is involved in some p' and p' positively regulates some p SLSO_relaxed.owl RO:0002430 biolink:NamedThing involved in negative regulation of c involved in regulation of p if c is involved in some p' and p' negatively regulates some p SLSO_relaxed.owl RO:0002432 biolink:NamedThing is active in c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure. SLSO_relaxed.owl RO:0002434 biolink:NamedThing interacts with A relationship that holds between two entities in which the processes executed by the two entities are causally connected. SLSO_relaxed.owl RO:0002436 biolink:NamedThing molecularly interacts with An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other. SLSO_relaxed.owl ECO:0000353 biolink:NamedThing SLSO_relaxed.owl RO:0002447 biolink:NamedThing phosphorylates SLSO_relaxed.owl RO:0002448 biolink:NamedThing directly regulates activity of The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B. SLSO_relaxed.owl RO:0011002 biolink:NamedThing regulates activity of The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B. SLSO_relaxed.owl ORCID:0000-0003-4639-4431 biolink:NamedThing SLSO_relaxed.owl RO:0002449 biolink:NamedThing directly negatively regulates activity of The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B. SLSO_relaxed.owl RO:0002450 biolink:NamedThing directly positively regulates activity of The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B. SLSO_relaxed.owl RO:0002464 biolink:NamedThing helper property (not for use in curation) SLSO_relaxed.owl RO:0002473 biolink:NamedThing composed primarily of x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y. SLSO_relaxed.owl RO:0002481 biolink:NamedThing is kinase activity SLSO_relaxed.owl RO:0002564 biolink:NamedThing molecular interaction relation helper property SLSO_relaxed.owl RO:0002493 biolink:NamedThing SLSO_relaxed.owl RO:0002494 biolink:NamedThing transformation of x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships SLSO_relaxed.owl RO:0002495 biolink:NamedThing immediate transformation of x immediate transformation of y iff x immediately succeeds y temporally at a time boundary t, and all of the matter present in x at t is present in y at t, and all the matter in y at t is present in x at t SLSO_relaxed.owl RO:0002595 biolink:NamedThing causal relation between material entity and a process A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity. SLSO_relaxed.owl RO:0002608 biolink:NamedThing process has causal agent Inverse of 'causal agent in process' SLSO_relaxed.owl BFO:0000169 biolink:NamedThing SLSO_relaxed.owl RO:0002506 biolink:NamedThing causal relation between entities SLSO_relaxed.owl RO:0002509 biolink:NamedThing determined by part of s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w. SLSO_relaxed.owl RO:0002559 biolink:NamedThing causally influenced by SLSO_relaxed.owl RO:0002566 biolink:NamedThing causally influences The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size). SLSO_relaxed.owl RO:0002563 biolink:NamedThing interaction relation helper property SLSO_relaxed.owl http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29 biolink:NamedThing SLSO_relaxed.owl RO:0002584 biolink:NamedThing has part structure that is capable of s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p SLSO_relaxed.owl RO:0002596 biolink:NamedThing capable of regulating Holds between c and p if and only if c is capable of some activity a, and a regulates p. SLSO_relaxed.owl RO:0002597 biolink:NamedThing capable of negatively regulating Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p. SLSO_relaxed.owl RO:0002598 biolink:NamedThing capable of positively regulating Holds between c and p if and only if c is capable of some activity a, and a positively regulates p. SLSO_relaxed.owl RO:0003000 biolink:NamedThing produces a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix. SLSO_relaxed.owl RO:0003001 biolink:NamedThing produced by a produced_by b iff some process that occurs_in b has_output a. SLSO_relaxed.owl RO:0004028 biolink:NamedThing realized in response to stimulus A relationship between a realizable entity R (e.g. function or disposition) and a material entity M where R is realized in response to a process that has an input stimulus of M. SLSO_relaxed.owl RO:0004031 biolink:NamedThing enables subfunction Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P. SLSO_relaxed.owl RO:0004032 biolink:NamedThing acts upstream of or within, positive effect SLSO_relaxed.owl http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect biolink:NamedThing SLSO_relaxed.owl RO:0004033 biolink:NamedThing acts upstream of or within, negative effect SLSO_relaxed.owl RO:0004034 biolink:NamedThing acts upstream of, positive effect c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive SLSO_relaxed.owl http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect biolink:NamedThing SLSO_relaxed.owl RO:0004035 biolink:NamedThing acts upstream of, negative effect c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative SLSO_relaxed.owl http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect biolink:NamedThing SLSO_relaxed.owl https://wiki.geneontology.org/Causally_upstream_of_or_within,_positive_effect biolink:NamedThing SLSO_relaxed.owl RO:0009501 biolink:NamedThing realized in response to r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. SLSO_relaxed.owl RO:0012011 biolink:NamedThing indirectly causally upstream of p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q. SLSO_relaxed.owl ORCID:0000-0003-1813-6857 biolink:NamedThing SLSO_relaxed.owl